Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 GSF2YML048W 1212 nt8.21□□□□□ -1.1
UPF3P48412 PGC1YPL206C 966 nt8.21□□□□□ -1.1
UPF3P48412 YBR232CYBR232C 360 nt8.19□□□□□ -1.1
UPF3P48412 STP3YLR375W 1032 nt8.18□□□□□ -1.1
UPF3P48412 ECM27YJR106W 2178 nt8.17□□□□□ -1.1
UPF3P48412 APS2YJR058C 444 nt8.17□□□□□ -1.1
UPF3P48412 NPP2YEL016C 1482 nt8.17□□□□□ -1.1
UPF3P48412 MLS1YNL117W 1665 nt8.17□□□□□ -1.1
UPF3P48412 KGD2YDR148C 1392 nt8.16□□□□□ -1.1
UPF3P48412 ENO2YHR174W 1314 nt8.16□□□□□ -1.1
UPF3P48412 PAU5YFL020C 369 nt8.15□□□□□ -1.1
UPF3P48412 YKL053WYKL053W 375 nt8.15□□□□□ -1.1
UPF3P48412 GPM1YKL152C 744 nt8.15□□□□□ -1.1
UPF3P48412 CDD1YLR245C 429 nt8.14□□□□□ -1.11
UPF3P48412 AAC3YBR085W 924 nt8.14□□□□□ -1.11
UPF3P48412 TPN1YGL186C 1740 nt8.14□□□□□ -1.11
UPF3P48412 TOM71YHR117W 1920 nt8.13□□□□□ -1.11
UPF3P48412 SAN1YDR143C 1833 nt8.13□□□□□ -1.11
UPF3P48412 MGM101YJR144W 810 nt8.12□□□□□ -1.11
UPF3P48412 YBL095WYBL095W 813 nt8.12□□□□□ -1.11
UPF3P48412 GGA2YHR108W 1758 nt8.12□□□□□ -1.11
UPF3P48412 FET5YFL041W 1869 nt8.11□□□□□ -1.11
UPF3P48412 ALR1YOL130W 2580 nt8.11□□□□□ -1.11
UPF3P48412 SBP1YHL034C 885 nt8.11□□□□□ -1.11
UPF3P48412 tS(GCU)LtS(GCU)L 80 nt8.11□□□□□ -1.11
UPF3P48412 YMR316C-BYMR316C-B 309 nt8.11□□□□□ -1.11
UPF3P48412 LEU2YCL018W 1095 nt8.11□□□□□ -1.11
UPF3P48412 THI3YDL080C 1830 nt8.1□□□□□ -1.11
UPF3P48412 PAR32YDL173W 888 nt8.09□□□□□ -1.11
UPF3P48412 TPC1YGR096W 945 nt8.09□□□□□ -1.11
UPF3P48412 YLR173WYLR173W 1827 nt8.08□□□□□ -1.12
UPF3P48412 NAS2YIL007C 663 nt8.08□□□□□ -1.12
UPF3P48412 YOR072WYOR072W 315 nt8.08□□□□□ -1.12
UPF3P48412 YMC2YBR104W 990 nt8.06□□□□□ -1.12
UPF3P48412 SRP54YPR088C 1626 nt8.06□□□□□ -1.12
UPF3P48412 NAM8YHR086W 1572 nt8.05□□□□□ -1.12
UPF3P48412 THP3YPR045C 1413 nt8.05□□□□□ -1.12
UPF3P48412 tD(GUC)BtD(GUC)B 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)DtD(GUC)D 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)G1tD(GUC)G1 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)G2tD(GUC)G2 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)I1tD(GUC)I1 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)I2tD(GUC)I2 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)J1tD(GUC)J1 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)J2tD(GUC)J2 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)J3tD(GUC)J3 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)J4tD(GUC)J4 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)KtD(GUC)K 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)L1tD(GUC)L1 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)L2tD(GUC)L2 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)MtD(GUC)M 72 nt8.04□□□□□ -1.12
UPF3P48412 tD(GUC)OtD(GUC)O 72 nt8.04□□□□□ -1.12
UPF3P48412 FSH2YMR222C 672 nt8.04□□□□□ -1.12
UPF3P48412 IGD1YFR017C 588 nt8.03□□□□□ -1.12
UPF3P48412 NSG2YNL156C 900 nt8.03□□□□□ -1.12
UPF3P48412 YPL041CYPL041C 624 nt8.03□□□□□ -1.12
UPF3P48412 THI6YPL214C 1623 nt8.03□□□□□ -1.12
UPF3P48412 AAT1YKL106W 1356 nt8.02□□□□□ -1.13
UPF3P48412 REX2YLR059C 810 nt8.02□□□□□ -1.13
UPF3P48412 MIM1YOL026C 342 nt8.02□□□□□ -1.13
UPF3P48412 TRP2YER090W 1524 nt8.02□□□□□ -1.13
UPF3P48412 MDL2YPL270W 2322 nt8.02□□□□□ -1.13
UPF3P48412 UBP13YBL067C 2244 nt8.02□□□□□ -1.13
UPF3P48412 HXT11YOL156W 1704 nt8.01□□□□□ -1.13
UPF3P48412 SEN2YLR105C 1134 nt8.01□□□□□ -1.13
UPF3P48412 GAS1YMR307W 1680 nt8.01□□□□□ -1.13
UPF3P48412 SNU66YOR308C 1764 nt8□□□□□ -1.13
UPF3P48412 MRS4YKR052C 915 nt8□□□□□ -1.13
UPF3P48412 YPT11YNL304W 1254 nt8□□□□□ -1.13
UPF3P48412 HBS1YKR084C 1836 nt8□□□□□ -1.13
UPF3P48412 EMC3YKL207W 762 nt7.99□□□□□ -1.13
UPF3P48412 PTC6YCR079W 1329 nt7.99□□□□□ -1.13
UPF3P48412 YJL064WYJL064W 396 nt7.97□□□□□ -1.13
UPF3P48412 SPE2YOL052C 1191 nt7.97□□□□□ -1.13
UPF3P48412 HDA1YNL021W 2121 nt7.96□□□□□ -1.13
UPF3P48412 PHB2YGR231C 933 nt7.96□□□□□ -1.14
UPF3P48412 TMS1YDR105C 1422 nt7.95□□□□□ -1.14
UPF3P48412 KRE1YNL322C 942 nt7.95□□□□□ -1.14
UPF3P48412 YLR072WYLR072W 2082 nt7.94□□□□□ -1.14
UPF3P48412 PAU19YMR325W 375 nt7.94□□□□□ -1.14
UPF3P48412 ORT1YOR130C 879 nt7.94□□□□□ -1.14
UPF3P48412 MEX67YPL169C 1800 nt7.94□□□□□ -1.14
UPF3P48412 tA(AGC)DtA(AGC)D 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)FtA(AGC)F 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)GtA(AGC)G 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)HtA(AGC)H 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)JtA(AGC)J 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)K1tA(AGC)K1 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)K2tA(AGC)K2 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)LtA(AGC)L 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)M1tA(AGC)M1 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)M2tA(AGC)M2 73 nt7.93□□□□□ -1.14
UPF3P48412 tA(AGC)PtA(AGC)P 73 nt7.93□□□□□ -1.14
UPF3P48412 NAP1YKR048C 1254 nt7.93□□□□□ -1.14
UPF3P48412 YMR210WYMR210W 1350 nt7.93□□□□□ -1.14
UPF3P48412 snR86snR86 1004 nt7.92□□□□□ -1.14
UPF3P48412 ADH3YMR083W 1128 nt7.92□□□□□ -1.14
UPF3P48412 PUP1YOR157C 786 nt7.92□□□□□ -1.14
UPF3P48412 IPL1YPL209C 1104 nt7.92□□□□□ -1.14
UPF3P48412 DUR3YHL016C 2208 nt7.92□□□□□ -1.14
Retrieved 100 of 7,029 protein–RNA pairs in 52.9 ms