Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx1P18111 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx1P18111 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx1P18111 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Cdx1P18111 Klhl22-201ENSMUST00000117192 2754 ntTSL 5 BASIC18.93■□□□□ 0.62
Cdx1P18111 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cdx1P18111 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.93■□□□□ 0.62
Cdx1P18111 Il17rd-202ENSMUST00000223942 2186 ntBASIC18.93■□□□□ 0.62
Cdx1P18111 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Cdx1P18111 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Cdx1P18111 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx1P18111 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC18.92■□□□□ 0.62
Cdx1P18111 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Cdx1P18111 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC18.92■□□□□ 0.62
Cdx1P18111 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Cdx1P18111 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC18.91■□□□□ 0.62
Cdx1P18111 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
Cdx1P18111 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Cdx1P18111 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Cdx1P18111 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Cdx1P18111 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cdx1P18111 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cdx1P18111 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cdx1P18111 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cdx1P18111 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cdx1P18111 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Cdx1P18111 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx1P18111 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx1P18111 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Cdx1P18111 Gm45855-201ENSMUST00000212546 880 ntBASIC18.87■□□□□ 0.61
Cdx1P18111 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx1P18111 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx1P18111 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx1P18111 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx1P18111 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Cdx1P18111 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Cdx1P18111 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cdx1P18111 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Cdx1P18111 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdx1P18111 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Cdx1P18111 Gm6345-201ENSMUST00000180378 1691 ntBASIC18.85■□□□□ 0.61
Cdx1P18111 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Cdx1P18111 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Cdx1P18111 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Cdx1P18111 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Cdx1P18111 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cdx1P18111 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Cdx1P18111 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Cdx1P18111 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx1P18111 Cdc42bpg-201ENSMUST00000025681 5995 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Cdx1P18111 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx1P18111 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx1P18111 March9-201ENSMUST00000040307 3037 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Cdx1P18111 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC18.82■□□□□ 0.6
Cdx1P18111 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdx1P18111 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Cdx1P18111 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Cdx1P18111 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Cdx1P18111 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Cdx1P18111 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdx1P18111 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Cdx1P18111 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdx1P18111 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Cdx1P18111 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Cdx1P18111 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cdx1P18111 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
Cdx1P18111 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Cdx1P18111 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cdx1P18111 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Cdx1P18111 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cdx1P18111 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Cdx1P18111 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx1P18111 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx1P18111 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC18.76■□□□□ 0.59
Cdx1P18111 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Cdx1P18111 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdx1P18111 Gm9397-201ENSMUST00000200125 605 ntBASIC18.75■□□□□ 0.59
Cdx1P18111 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Cdx1P18111 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdx1P18111 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdx1P18111 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Cdx1P18111 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
Cdx1P18111 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.73■□□□□ 0.59
Cdx1P18111 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
Cdx1P18111 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC18.72■□□□□ 0.59
Cdx1P18111 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.72■□□□□ 0.59
Cdx1P18111 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx1P18111 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
Cdx1P18111 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx1P18111 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx1P18111 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Cdx1P18111 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC18.71■□□□□ 0.58
Cdx1P18111 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx1P18111 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx1P18111 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx1P18111 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx1P18111 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx1P18111 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Cdx1P18111 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Cdx1P18111 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms