Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22,64■■□□□ 1,22
Msx1P13297 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC22,64■■□□□ 1,21
Msx1P13297 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC22,63■■□□□ 1,21
Msx1P13297 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC22,63■■□□□ 1,21
Msx1P13297 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC22,63■■□□□ 1,21
Msx1P13297 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC22,63■■□□□ 1,21
Msx1P13297 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC22,63■■□□□ 1,21
Msx1P13297 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC22,63■■□□□ 1,21
Msx1P13297 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC22,63■■□□□ 1,21
Msx1P13297 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC22,61■■□□□ 1,21
Msx1P13297 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC22,61■■□□□ 1,21
Msx1P13297 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC22,6■■□□□ 1,21
Msx1P13297 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC22,6■■□□□ 1,21
Msx1P13297 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC22,59■■□□□ 1,21
Msx1P13297 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC22,59■■□□□ 1,21
Msx1P13297 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC22,59■■□□□ 1,21
Msx1P13297 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC22,59■■□□□ 1,21
Msx1P13297 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC22,59■■□□□ 1,21
Msx1P13297 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC22,58■■□□□ 1,21
Msx1P13297 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC22,58■■□□□ 1,21
Msx1P13297 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC22,58■■□□□ 1,21
Msx1P13297 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC22,57■■□□□ 1,2
Msx1P13297 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC22,57■■□□□ 1,2
Msx1P13297 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC22,57■■□□□ 1,2
Msx1P13297 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC22,57■■□□□ 1,2
Msx1P13297 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC22,57■■□□□ 1,2
Msx1P13297 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC22,56■■□□□ 1,2
Msx1P13297 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC22,56■■□□□ 1,2
Msx1P13297 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC22,56■■□□□ 1,2
Msx1P13297 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC22,56■■□□□ 1,2
Msx1P13297 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC22,56■■□□□ 1,2
Msx1P13297 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC22,56■■□□□ 1,2
Msx1P13297 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC22,55■■□□□ 1,2
Msx1P13297 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC22,55■■□□□ 1,2
Msx1P13297 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC22,55■■□□□ 1,2
Msx1P13297 Gm11175-201ENSMUST00000116172 543 ntBASIC22,54■■□□□ 1,2
Msx1P13297 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC22,54■■□□□ 1,2
Msx1P13297 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC22,53■■□□□ 1,2
Msx1P13297 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC22,53■■□□□ 1,2
Msx1P13297 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22,52■■□□□ 1,2
Msx1P13297 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC22,52■■□□□ 1,2
Msx1P13297 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC22,52■■□□□ 1,2
Msx1P13297 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC22,52■■□□□ 1,2
Msx1P13297 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC22,51■■□□□ 1,19
Msx1P13297 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC22,51■■□□□ 1,19
Msx1P13297 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC22,51■■□□□ 1,19
Msx1P13297 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC22,51■■□□□ 1,19
Msx1P13297 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC22,51■■□□□ 1,19
Msx1P13297 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC22,51■■□□□ 1,19
Msx1P13297 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC22,51■■□□□ 1,19
Msx1P13297 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC22,51■■□□□ 1,19
Msx1P13297 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC22,5■■□□□ 1,19
Msx1P13297 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC22,5■■□□□ 1,19
Msx1P13297 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC22,5■■□□□ 1,19
Msx1P13297 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC22,49■■□□□ 1,19
Msx1P13297 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC22,49■■□□□ 1,19
Msx1P13297 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC22,49■■□□□ 1,19
Msx1P13297 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC22,48■■□□□ 1,19
Msx1P13297 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC22,48■■□□□ 1,19
Msx1P13297 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC22,46■■□□□ 1,19
Msx1P13297 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC22,46■■□□□ 1,19
Msx1P13297 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC22,45■■□□□ 1,18
Msx1P13297 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC22,45■■□□□ 1,18
Msx1P13297 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC22,45■■□□□ 1,18
Msx1P13297 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC22,44■■□□□ 1,18
Msx1P13297 Fezf2-202ENSMUST00000224023 1917 ntBASIC22,44■■□□□ 1,18
Msx1P13297 Cap2-205ENSMUST00000225824 1634 ntBASIC22,44■■□□□ 1,18
Msx1P13297 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC22,44■■□□□ 1,18
Msx1P13297 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC22,43■■□□□ 1,18
Msx1P13297 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC22,43■■□□□ 1,18
Msx1P13297 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC22,43■■□□□ 1,18
Msx1P13297 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22,41■■□□□ 1,18
Msx1P13297 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC22,41■■□□□ 1,18
Msx1P13297 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC22,41■■□□□ 1,18
Msx1P13297 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC22,41■■□□□ 1,18
Msx1P13297 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC22,41■■□□□ 1,18
Msx1P13297 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC22,4■■□□□ 1,18
Msx1P13297 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC22,4■■□□□ 1,18
Msx1P13297 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC22,4■■□□□ 1,18
Msx1P13297 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC22,4■■□□□ 1,18
Msx1P13297 Lmo2-202ENSMUST00000111140 1706 ntTSL 1 (best) BASIC22,4■■□□□ 1,18
Msx1P13297 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC22,39■■□□□ 1,17
Msx1P13297 Pcf11-205ENSMUST00000208255 1720 ntBASIC22,38■■□□□ 1,17
Msx1P13297 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC22,37■■□□□ 1,17
Msx1P13297 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC22,37■■□□□ 1,17
Msx1P13297 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC22,37■■□□□ 1,17
Msx1P13297 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC22,37■■□□□ 1,17
Msx1P13297 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC22,37■■□□□ 1,17
Msx1P13297 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC22,36■■□□□ 1,17
Msx1P13297 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC22,36■■□□□ 1,17
Msx1P13297 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC22,35■■□□□ 1,17
Msx1P13297 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC22,35■■□□□ 1,17
Msx1P13297 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC22,34■■□□□ 1,17
Msx1P13297 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC22,34■■□□□ 1,17
Msx1P13297 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22,33■■□□□ 1,16
Msx1P13297 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC22,32■■□□□ 1,16
Msx1P13297 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC22,31■■□□□ 1,16
Msx1P13297 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC22,31■■□□□ 1,16
Msx1P13297 AC131739.1-201ENSMUST00000221692 1245 ntBASIC22,31■■□□□ 1,16
Msx1P13297 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC22,31■■□□□ 1,16
Retrieved 100 of 76,532 protein–RNA pairs in 30,8 ms