Protein–RNA interactions for Protein: O70209

Pdlim3, PDZ and LIM domain protein 3, mousemouse

Known RBP Predictions only

Length 316 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim3O70209 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Pdlim3O70209 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Pdlim3O70209 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
Pdlim3O70209 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Pdlim3O70209 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Pdlim3O70209 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Pdlim3O70209 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Pdlim3O70209 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Pdlim3O70209 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Pdlim3O70209 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Pdlim3O70209 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Pdlim3O70209 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
Pdlim3O70209 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Pdlim3O70209 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Pdlim3O70209 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.53■■□□□ 1.04
Pdlim3O70209 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
Pdlim3O70209 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Pdlim3O70209 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.03
Pdlim3O70209 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Pdlim3O70209 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Pdlim3O70209 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Pdlim3O70209 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Pdlim3O70209 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Pdlim3O70209 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pdlim3O70209 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Pdlim3O70209 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pdlim3O70209 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Pdlim3O70209 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Pdlim3O70209 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Pdlim3O70209 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pdlim3O70209 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.48■■□□□ 1.03
Pdlim3O70209 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Pdlim3O70209 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
Pdlim3O70209 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Pdlim3O70209 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pdlim3O70209 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pdlim3O70209 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Pdlim3O70209 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Pdlim3O70209 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Pdlim3O70209 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pdlim3O70209 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Pdlim3O70209 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
Pdlim3O70209 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC21.45■■□□□ 1.02
Pdlim3O70209 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pdlim3O70209 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pdlim3O70209 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pdlim3O70209 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Pdlim3O70209 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pdlim3O70209 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pdlim3O70209 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Pdlim3O70209 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Pdlim3O70209 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Pdlim3O70209 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Pdlim3O70209 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Pdlim3O70209 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pdlim3O70209 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Pdlim3O70209 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Pdlim3O70209 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Pdlim3O70209 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Pdlim3O70209 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Pdlim3O70209 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Pdlim3O70209 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Pdlim3O70209 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Pdlim3O70209 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC21.36■■□□□ 1.01
Pdlim3O70209 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Pdlim3O70209 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC21.35■■□□□ 1.01
Pdlim3O70209 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pdlim3O70209 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pdlim3O70209 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Pdlim3O70209 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.34■■□□□ 1.01
Pdlim3O70209 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Pdlim3O70209 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pdlim3O70209 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pdlim3O70209 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Pdlim3O70209 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Pdlim3O70209 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Pdlim3O70209 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.33■■□□□ 1
Pdlim3O70209 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.32■■□□□ 1
Pdlim3O70209 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Pdlim3O70209 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Pdlim3O70209 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC21.32■■□□□ 1
Pdlim3O70209 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.31■■□□□ 1
Pdlim3O70209 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.31■■□□□ 1
Pdlim3O70209 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Pdlim3O70209 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Pdlim3O70209 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Pdlim3O70209 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC21.29■■□□□ 1
Pdlim3O70209 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
Pdlim3O70209 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.29■■□□□ 1
Pdlim3O70209 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Pdlim3O70209 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Pdlim3O70209 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 9.8 ms