Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.11■□□□□ 0.97
Trav13d-3J3QMG8 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav13d-3J3QMG8 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav13d-3J3QMG8 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav13d-3J3QMG8 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav13d-3J3QMG8 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trav13d-3J3QMG8 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
Trav13d-3J3QMG8 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav13d-3J3QMG8 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav13d-3J3QMG8 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trav13d-3J3QMG8 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trav13d-3J3QMG8 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trav13d-3J3QMG8 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Trav13d-3J3QMG8 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trav13d-3J3QMG8 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav13d-3J3QMG8 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav13d-3J3QMG8 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav13d-3J3QMG8 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC21.05■□□□□ 0.96
Trav13d-3J3QMG8 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trav13d-3J3QMG8 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Trav13d-3J3QMG8 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav13d-3J3QMG8 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Trav13d-3J3QMG8 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.02■□□□□ 0.96
Trav13d-3J3QMG8 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC21.01■□□□□ 0.95
Trav13d-3J3QMG8 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC21.01■□□□□ 0.95
Trav13d-3J3QMG8 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trav13d-3J3QMG8 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Trav13d-3J3QMG8 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trav13d-3J3QMG8 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21■□□□□ 0.95
Trav13d-3J3QMG8 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
Trav13d-3J3QMG8 Gm30023-201ENSMUST00000197970 889 ntBASIC21■□□□□ 0.95
Trav13d-3J3QMG8 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trav13d-3J3QMG8 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav13d-3J3QMG8 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC20.98■□□□□ 0.95
Trav13d-3J3QMG8 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav13d-3J3QMG8 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav13d-3J3QMG8 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav13d-3J3QMG8 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Trav13d-3J3QMG8 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav13d-3J3QMG8 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav13d-3J3QMG8 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Trav13d-3J3QMG8 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.97■□□□□ 0.95
Trav13d-3J3QMG8 Scx-201ENSMUST00000043089 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav13d-3J3QMG8 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav13d-3J3QMG8 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Trav13d-3J3QMG8 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Trav13d-3J3QMG8 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
Trav13d-3J3QMG8 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Trav13d-3J3QMG8 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.95■□□□□ 0.94
Trav13d-3J3QMG8 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav13d-3J3QMG8 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav13d-3J3QMG8 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav13d-3J3QMG8 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Trav13d-3J3QMG8 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Trav13d-3J3QMG8 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Trav13d-3J3QMG8 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trav13d-3J3QMG8 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav13d-3J3QMG8 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Trav13d-3J3QMG8 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav13d-3J3QMG8 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav13d-3J3QMG8 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Trav13d-3J3QMG8 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav13d-3J3QMG8 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trav13d-3J3QMG8 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trav13d-3J3QMG8 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Trav13d-3J3QMG8 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav13d-3J3QMG8 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav13d-3J3QMG8 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Trav13d-3J3QMG8 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trav13d-3J3QMG8 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav13d-3J3QMG8 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Trav13d-3J3QMG8 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trav13d-3J3QMG8 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC20.89■□□□□ 0.93
Trav13d-3J3QMG8 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Trav13d-3J3QMG8 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.88■□□□□ 0.93
Trav13d-3J3QMG8 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav13d-3J3QMG8 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
Trav13d-3J3QMG8 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav13d-3J3QMG8 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Trav13d-3J3QMG8 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav13d-3J3QMG8 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Trav13d-3J3QMG8 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC20.87■□□□□ 0.93
Trav13d-3J3QMG8 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
Trav13d-3J3QMG8 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav13d-3J3QMG8 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Trav13d-3J3QMG8 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trav13d-3J3QMG8 Nkain2-201ENSMUST00000092602 558 ntBASIC20.86■□□□□ 0.93
Trav13d-3J3QMG8 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.86■□□□□ 0.93
Trav13d-3J3QMG8 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Trav13d-3J3QMG8 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Trav13d-3J3QMG8 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav13d-3J3QMG8 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Trav13d-3J3QMG8 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC20.85■□□□□ 0.93
Trav13d-3J3QMG8 Gm42809-201ENSMUST00000198429 1138 ntBASIC20.85■□□□□ 0.93
Trav13d-3J3QMG8 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Trav13d-3J3QMG8 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Trav13d-3J3QMG8 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
Trav13d-3J3QMG8 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
Trav13d-3J3QMG8 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Trav13d-3J3QMG8 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms