Protein–RNA interactions for Protein: A0A0J9YTW6

Scn2a, Sodium channel protein, mousemouse

Predictions only

Length 2,006 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn2aA0A0J9YTW6 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Scn2aA0A0J9YTW6 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC22.16■■□□□ 1.14
Scn2aA0A0J9YTW6 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Scn2aA0A0J9YTW6 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Scn2aA0A0J9YTW6 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Scn2aA0A0J9YTW6 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC22.14■■□□□ 1.14
Scn2aA0A0J9YTW6 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC22.14■■□□□ 1.14
Scn2aA0A0J9YTW6 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Scn2aA0A0J9YTW6 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.13
Scn2aA0A0J9YTW6 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
Scn2aA0A0J9YTW6 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC22.13■■□□□ 1.13
Scn2aA0A0J9YTW6 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Scn2aA0A0J9YTW6 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
Scn2aA0A0J9YTW6 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Scn2aA0A0J9YTW6 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Scn2aA0A0J9YTW6 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
Scn2aA0A0J9YTW6 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
Scn2aA0A0J9YTW6 Nkain2-201ENSMUST00000092602 558 ntBASIC22.11■■□□□ 1.13
Scn2aA0A0J9YTW6 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC22.11■■□□□ 1.13
Scn2aA0A0J9YTW6 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn2aA0A0J9YTW6 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Scn2aA0A0J9YTW6 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Scn2aA0A0J9YTW6 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn2aA0A0J9YTW6 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn2aA0A0J9YTW6 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn2aA0A0J9YTW6 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn2aA0A0J9YTW6 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Scn2aA0A0J9YTW6 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC22.07■■□□□ 1.12
Scn2aA0A0J9YTW6 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC22.07■■□□□ 1.12
Scn2aA0A0J9YTW6 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC22.06■■□□□ 1.12
Scn2aA0A0J9YTW6 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn2aA0A0J9YTW6 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Scn2aA0A0J9YTW6 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC22.06■■□□□ 1.12
Scn2aA0A0J9YTW6 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn2aA0A0J9YTW6 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
Scn2aA0A0J9YTW6 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Scn2aA0A0J9YTW6 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC22.04■■□□□ 1.12
Scn2aA0A0J9YTW6 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn2aA0A0J9YTW6 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
Scn2aA0A0J9YTW6 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
Scn2aA0A0J9YTW6 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Scn2aA0A0J9YTW6 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC22■■□□□ 1.11
Scn2aA0A0J9YTW6 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC22■■□□□ 1.11
Scn2aA0A0J9YTW6 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Scn2aA0A0J9YTW6 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC21.98■■□□□ 1.11
Scn2aA0A0J9YTW6 Gm30023-201ENSMUST00000197970 889 ntBASIC21.98■■□□□ 1.11
Scn2aA0A0J9YTW6 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Scn2aA0A0J9YTW6 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Scn2aA0A0J9YTW6 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.97■■□□□ 1.11
Scn2aA0A0J9YTW6 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Scn2aA0A0J9YTW6 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
Scn2aA0A0J9YTW6 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
Scn2aA0A0J9YTW6 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.95■■□□□ 1.1
Scn2aA0A0J9YTW6 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.94■■□□□ 1.1
Scn2aA0A0J9YTW6 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
Scn2aA0A0J9YTW6 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21.92■■□□□ 1.1
Scn2aA0A0J9YTW6 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
Scn2aA0A0J9YTW6 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21.92■■□□□ 1.1
Scn2aA0A0J9YTW6 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
Scn2aA0A0J9YTW6 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
Scn2aA0A0J9YTW6 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC21.91■■□□□ 1.1
Scn2aA0A0J9YTW6 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Scn2aA0A0J9YTW6 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
Scn2aA0A0J9YTW6 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC21.9■■□□□ 1.1
Scn2aA0A0J9YTW6 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
Scn2aA0A0J9YTW6 Gm7432-201ENSMUST00000210343 879 ntBASIC21.9■■□□□ 1.1
Scn2aA0A0J9YTW6 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
Scn2aA0A0J9YTW6 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
Scn2aA0A0J9YTW6 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Scn2aA0A0J9YTW6 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Scn2aA0A0J9YTW6 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
Scn2aA0A0J9YTW6 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Scn2aA0A0J9YTW6 Gm5987-201ENSMUST00000196433 1151 ntBASIC21.86■■□□□ 1.09
Scn2aA0A0J9YTW6 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21.86■■□□□ 1.09
Scn2aA0A0J9YTW6 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Scn2aA0A0J9YTW6 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Scn2aA0A0J9YTW6 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Scn2aA0A0J9YTW6 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
Scn2aA0A0J9YTW6 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
Scn2aA0A0J9YTW6 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC21.84■■□□□ 1.09
Scn2aA0A0J9YTW6 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Scn2aA0A0J9YTW6 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Scn2aA0A0J9YTW6 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Scn2aA0A0J9YTW6 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Scn2aA0A0J9YTW6 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Scn2aA0A0J9YTW6 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Scn2aA0A0J9YTW6 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Scn2aA0A0J9YTW6 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC21.82■■□□□ 1.08
Scn2aA0A0J9YTW6 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Scn2aA0A0J9YTW6 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Scn2aA0A0J9YTW6 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Scn2aA0A0J9YTW6 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Scn2aA0A0J9YTW6 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Scn2aA0A0J9YTW6 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Scn2aA0A0J9YTW6 Gm11599-201ENSMUST00000118720 878 ntBASIC21.79■■□□□ 1.08
Scn2aA0A0J9YTW6 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
Scn2aA0A0J9YTW6 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.79■■□□□ 1.08
Scn2aA0A0J9YTW6 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Scn2aA0A0J9YTW6 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Scn2aA0A0J9YTW6 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms