Protein–RNA interactions for Protein: A0A075B639

Trav6-7-dv9, T cell receptor alpha variable 6-7-DV9 (Fragment), mousemouse

Predictions only

Length 125 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-7-dv9A0A075B639 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
Trav6-7-dv9A0A075B639 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trav6-7-dv9A0A075B639 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trav6-7-dv9A0A075B639 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
Trav6-7-dv9A0A075B639 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trav6-7-dv9A0A075B639 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trav6-7-dv9A0A075B639 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trav6-7-dv9A0A075B639 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trav6-7-dv9A0A075B639 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav6-7-dv9A0A075B639 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav6-7-dv9A0A075B639 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trav6-7-dv9A0A075B639 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trav6-7-dv9A0A075B639 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Trav6-7-dv9A0A075B639 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Trav6-7-dv9A0A075B639 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trav6-7-dv9A0A075B639 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Trav6-7-dv9A0A075B639 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trav6-7-dv9A0A075B639 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Trav6-7-dv9A0A075B639 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trav6-7-dv9A0A075B639 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
Trav6-7-dv9A0A075B639 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6-7-dv9A0A075B639 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6-7-dv9A0A075B639 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6-7-dv9A0A075B639 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6-7-dv9A0A075B639 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Trav6-7-dv9A0A075B639 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trav6-7-dv9A0A075B639 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
Trav6-7-dv9A0A075B639 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6-7-dv9A0A075B639 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trav6-7-dv9A0A075B639 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC21.08■□□□□ 0.97
Trav6-7-dv9A0A075B639 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trav6-7-dv9A0A075B639 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC21.08■□□□□ 0.96
Trav6-7-dv9A0A075B639 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav6-7-dv9A0A075B639 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Trav6-7-dv9A0A075B639 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC21.07■□□□□ 0.96
Trav6-7-dv9A0A075B639 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trav6-7-dv9A0A075B639 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trav6-7-dv9A0A075B639 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.06■□□□□ 0.96
Trav6-7-dv9A0A075B639 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav6-7-dv9A0A075B639 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trav6-7-dv9A0A075B639 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trav6-7-dv9A0A075B639 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trav6-7-dv9A0A075B639 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav6-7-dv9A0A075B639 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav6-7-dv9A0A075B639 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trav6-7-dv9A0A075B639 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.03■□□□□ 0.96
Trav6-7-dv9A0A075B639 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC21.03■□□□□ 0.96
Trav6-7-dv9A0A075B639 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC21.02■□□□□ 0.96
Trav6-7-dv9A0A075B639 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
Trav6-7-dv9A0A075B639 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav6-7-dv9A0A075B639 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Trav6-7-dv9A0A075B639 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav6-7-dv9A0A075B639 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trav6-7-dv9A0A075B639 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trav6-7-dv9A0A075B639 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trav6-7-dv9A0A075B639 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trav6-7-dv9A0A075B639 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Trav6-7-dv9A0A075B639 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Trav6-7-dv9A0A075B639 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav6-7-dv9A0A075B639 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Trav6-7-dv9A0A075B639 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Trav6-7-dv9A0A075B639 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Trav6-7-dv9A0A075B639 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trav6-7-dv9A0A075B639 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trav6-7-dv9A0A075B639 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Trav6-7-dv9A0A075B639 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav6-7-dv9A0A075B639 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Trav6-7-dv9A0A075B639 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Trav6-7-dv9A0A075B639 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Trav6-7-dv9A0A075B639 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav6-7-dv9A0A075B639 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.94■□□□□ 0.94
Trav6-7-dv9A0A075B639 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Trav6-7-dv9A0A075B639 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav6-7-dv9A0A075B639 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav6-7-dv9A0A075B639 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Trav6-7-dv9A0A075B639 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav6-7-dv9A0A075B639 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Trav6-7-dv9A0A075B639 Gm30023-201ENSMUST00000197970 889 ntBASIC20.93■□□□□ 0.94
Trav6-7-dv9A0A075B639 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Trav6-7-dv9A0A075B639 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trav6-7-dv9A0A075B639 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Trav6-7-dv9A0A075B639 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav6-7-dv9A0A075B639 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav6-7-dv9A0A075B639 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Trav6-7-dv9A0A075B639 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Trav6-7-dv9A0A075B639 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Trav6-7-dv9A0A075B639 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trav6-7-dv9A0A075B639 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Trav6-7-dv9A0A075B639 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
Trav6-7-dv9A0A075B639 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Trav6-7-dv9A0A075B639 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC20.9■□□□□ 0.94
Trav6-7-dv9A0A075B639 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Trav6-7-dv9A0A075B639 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Trav6-7-dv9A0A075B639 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.89■□□□□ 0.93
Trav6-7-dv9A0A075B639 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Trav6-7-dv9A0A075B639 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Trav6-7-dv9A0A075B639 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC20.88■□□□□ 0.93
Trav6-7-dv9A0A075B639 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Trav6-7-dv9A0A075B639 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Trav6-7-dv9A0A075B639 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 11.1 ms