Protein–RNA interactions for Protein: A0A075B639

Trav6-7-dv9, T cell receptor alpha variable 6-7-DV9 (Fragment), mousemouse

Predictions only

Length 125 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-7-dv9A0A075B639 Gm25239-201ENSMUST00000174915 86 ntBASIC32■■■□□ 2.71
Trav6-7-dv9A0A075B639 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
Trav6-7-dv9A0A075B639 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
Trav6-7-dv9A0A075B639 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
Trav6-7-dv9A0A075B639 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC29.29■■■□□ 2.28
Trav6-7-dv9A0A075B639 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Trav6-7-dv9A0A075B639 Gm15042-201ENSMUST00000120212 883 ntBASIC28.59■■■□□ 2.17
Trav6-7-dv9A0A075B639 Psd-208ENSMUST00000224556 2034 ntBASIC28.32■■■□□ 2.12
Trav6-7-dv9A0A075B639 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
Trav6-7-dv9A0A075B639 Gm15045-201ENSMUST00000117359 883 ntBASIC28.01■■■□□ 2.07
Trav6-7-dv9A0A075B639 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC27.84■■■□□ 2.05
Trav6-7-dv9A0A075B639 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
Trav6-7-dv9A0A075B639 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC27.68■■■□□ 2.02
Trav6-7-dv9A0A075B639 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
Trav6-7-dv9A0A075B639 Gm24109-201ENSMUST00000175489 103 ntBASIC27.43■■□□□ 1.98
Trav6-7-dv9A0A075B639 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
Trav6-7-dv9A0A075B639 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
Trav6-7-dv9A0A075B639 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
Trav6-7-dv9A0A075B639 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Trav6-7-dv9A0A075B639 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Trav6-7-dv9A0A075B639 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
Trav6-7-dv9A0A075B639 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Trav6-7-dv9A0A075B639 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.99■■□□□ 1.91
Trav6-7-dv9A0A075B639 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
Trav6-7-dv9A0A075B639 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC26.95■■□□□ 1.9
Trav6-7-dv9A0A075B639 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC26.94■■□□□ 1.9
Trav6-7-dv9A0A075B639 Gm23366-201ENSMUST00000175022 89 ntBASIC26.87■■□□□ 1.89
Trav6-7-dv9A0A075B639 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Trav6-7-dv9A0A075B639 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Trav6-7-dv9A0A075B639 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Trav6-7-dv9A0A075B639 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC26.74■■□□□ 1.87
Trav6-7-dv9A0A075B639 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC26.72■■□□□ 1.87
Trav6-7-dv9A0A075B639 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Trav6-7-dv9A0A075B639 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Trav6-7-dv9A0A075B639 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
Trav6-7-dv9A0A075B639 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Trav6-7-dv9A0A075B639 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Trav6-7-dv9A0A075B639 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC26.29■■□□□ 1.8
Trav6-7-dv9A0A075B639 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trav6-7-dv9A0A075B639 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trav6-7-dv9A0A075B639 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
Trav6-7-dv9A0A075B639 AC153911.1-202ENSMUST00000218534 1034 ntBASIC26.21■■□□□ 1.79
Trav6-7-dv9A0A075B639 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
Trav6-7-dv9A0A075B639 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC26.08■■□□□ 1.77
Trav6-7-dv9A0A075B639 Gm10524-201ENSMUST00000181931 1893 ntBASIC26.08■■□□□ 1.77
Trav6-7-dv9A0A075B639 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Trav6-7-dv9A0A075B639 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Trav6-7-dv9A0A075B639 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Trav6-7-dv9A0A075B639 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Trav6-7-dv9A0A075B639 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
Trav6-7-dv9A0A075B639 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
Trav6-7-dv9A0A075B639 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Trav6-7-dv9A0A075B639 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trav6-7-dv9A0A075B639 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
Trav6-7-dv9A0A075B639 CT025624.2-201ENSMUST00000223609 1909 ntBASIC25.47■■□□□ 1.67
Trav6-7-dv9A0A075B639 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
Trav6-7-dv9A0A075B639 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC25.35■■□□□ 1.65
Trav6-7-dv9A0A075B639 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
Trav6-7-dv9A0A075B639 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Trav6-7-dv9A0A075B639 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC25.3■■□□□ 1.64
Trav6-7-dv9A0A075B639 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Trav6-7-dv9A0A075B639 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC25.29■■□□□ 1.64
Trav6-7-dv9A0A075B639 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Trav6-7-dv9A0A075B639 Gm42596-201ENSMUST00000196305 1958 ntBASIC25.27■■□□□ 1.64
Trav6-7-dv9A0A075B639 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC25.19■■□□□ 1.62
Trav6-7-dv9A0A075B639 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC25.19■■□□□ 1.62
Trav6-7-dv9A0A075B639 Gm27325-201ENSMUST00000175467 74 ntBASIC25.15■■□□□ 1.62
Trav6-7-dv9A0A075B639 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Trav6-7-dv9A0A075B639 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Trav6-7-dv9A0A075B639 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC25.06■■□□□ 1.6
Trav6-7-dv9A0A075B639 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC25.04■■□□□ 1.6
Trav6-7-dv9A0A075B639 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
Trav6-7-dv9A0A075B639 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Trav6-7-dv9A0A075B639 Gm25238-201ENSMUST00000174914 89 ntBASIC25.03■■□□□ 1.6
Trav6-7-dv9A0A075B639 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
Trav6-7-dv9A0A075B639 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Trav6-7-dv9A0A075B639 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
Trav6-7-dv9A0A075B639 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Trav6-7-dv9A0A075B639 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Trav6-7-dv9A0A075B639 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC24.91■■□□□ 1.58
Trav6-7-dv9A0A075B639 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Trav6-7-dv9A0A075B639 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
Trav6-7-dv9A0A075B639 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Trav6-7-dv9A0A075B639 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Trav6-7-dv9A0A075B639 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Trav6-7-dv9A0A075B639 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Trav6-7-dv9A0A075B639 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
Trav6-7-dv9A0A075B639 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
Trav6-7-dv9A0A075B639 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.55
Trav6-7-dv9A0A075B639 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
Trav6-7-dv9A0A075B639 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Trav6-7-dv9A0A075B639 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
Trav6-7-dv9A0A075B639 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC24.65■■□□□ 1.54
Trav6-7-dv9A0A075B639 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
Trav6-7-dv9A0A075B639 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
Trav6-7-dv9A0A075B639 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC24.64■■□□□ 1.54
Trav6-7-dv9A0A075B639 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
Trav6-7-dv9A0A075B639 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
Trav6-7-dv9A0A075B639 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC24.55■■□□□ 1.52
Trav6-7-dv9A0A075B639 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC24.53■■□□□ 1.52
Retrieved 100 of 76,532 protein–RNA pairs in 7.6 ms