Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 ATP5J2-201ENST00000292475 607 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 RNA5SP260-201ENST00000363849 111 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 MXI1-204ENST00000369612 879 ntTSL 3 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 SNORD15A-201ENST00000384214 148 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 SNORA70.8-201ENST00000384231 136 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 TRBV28-201ENST00000390400 364 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 NHP2P2-201ENST00000396362 460 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 CFLAR-212ENST00000440180 1198 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 LINC00578-202ENST00000442937 612 ntTSL 3 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 ARMC8P1-201ENST00000443069 1289 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 RBMY2AP-201ENST00000445405 1157 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 RBMY2CP-201ENST00000448575 1157 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 RBMY2DP-202ENST00000448881 1157 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC013429.1-201ENST00000456604 422 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC135721.2-201ENST00000464237 300 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 RN7SL791P-201ENST00000467868 295 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 RN7SL228P-201ENST00000470060 303 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 HLTF-AS1-201ENST00000492461 415 ntTSL 3 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 HMGB3P14-201ENST00000494195 599 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC111000.5-201ENST00000506559 1178 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC117383.2-201ENST00000514722 322 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 RN7SKP233-201ENST00000517005 110 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC087672.3-201ENST00000519323 738 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC103409.1-201ENST00000521199 564 ntTSL 5 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 CA3-AS1-203ENST00000524052 430 ntTSL 2 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC084816.1-202ENST00000536744 647 ntTSL 2 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 VTCN1-207ENST00000539893 2719 ntTSL 2 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 AL049869.4-201ENST00000555669 178 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC009119.1-202ENST00000567342 543 ntTSL 4 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 MIR3135A-201ENST00000578460 77 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 LINC00906-202ENST00000587998 648 ntTSL 3 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 MIR663AHG-213ENST00000596767 837 ntTSL 5 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC062029.1-202ENST00000606164 3651 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 GMDS-AS1-215ENST00000606884 580 ntTSL 2 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC107419.1-202ENST00000608735 1081 ntTSL 3 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC241377.2-201ENST00000612313 553 ntTSL 4 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 CCL4L2-212ENST00000615418 954 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 EAPP-205ENST00000618169 1237 ntTSL 5 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC241377.2-202ENST00000636462 997 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 AL596275.2-203ENST00000641951 371 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 AC119674.1-209ENST00000642031 997 ntBASIC6.12□□□□□ -1.43
NKX3-1Q99801 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
NKX3-1Q99801 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC6.12□□□□□ -1.43
NKX3-1Q99801 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 LINC01441-201ENST00000433766 2290 ntTSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AP002800.1-201ENST00000624982 2225 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 FKBP5-202ENST00000536438 3940 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AADAC-201ENST00000232892 1642 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC130456.1-201ENST00000565085 1363 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 RNA5SP472-201ENST00000363868 119 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 IFNA16-201ENST00000380216 939 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 RPL31-203ENST00000409028 1110 ntTSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 RPL12P10-201ENST00000413498 498 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC020983.1-201ENST00000417063 543 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC097713.1-201ENST00000418025 562 ntTSL 4 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 RPL36P18-201ENST00000419316 318 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC007283.1-201ENST00000434645 445 ntTSL 5 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC087499.3-202ENST00000441215 1173 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 NPPA-AS1-202ENST00000446542 1032 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 OR51P1P-201ENST00000447547 942 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 GHRL-210ENST00000449238 440 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
NKX3-1Q99801 PMS2P11-201ENST00000451831 574 ntBASIC6.11□□□□□ -1.43
NKX3-1Q99801 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 CADM2-AS2-201ENST00000467225 768 ntTSL 5 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 LINC02374-201ENST00000503637 743 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 RASGRF2-AS1-201ENST00000505107 665 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC096741.2-201ENST00000510225 637 ntTSL 5 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC018541.1-201ENST00000517706 764 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 LACTB2-AS1-204ENST00000519167 793 ntTSL 3 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC083843.1-201ENST00000521444 849 ntTSL 4 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 SFTA3-210ENST00000521945 1116 ntTSL 2 BASIC6.11□□□□□ -1.43
NKX3-1Q99801 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms