Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC011742.2-201ENST00000443818 352 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC068491.1-201ENST00000449539 1241 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 CYB5A-204ENST00000494131 776 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC008770.1-202ENST00000495324 516 ntTSL 2 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC110760.2-202ENST00000507517 946 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 RN7SKP5-201ENST00000517045 272 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 AP000893.2-201ENST00000527550 433 ntTSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AL356800.1-201ENST00000553339 735 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 WDR61-205ENST00000558459 884 ntTSL 3 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC118757.1-202ENST00000589074 609 ntTSL 2 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 EIF1-207ENST00000591776 797 ntTSL 4 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AL512413.1-201ENST00000606489 382 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 MIR7162-201ENST00000611134 69 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 DLST-216ENST00000626051 252 ntTSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AL157778.1-201ENST00000626665 729 ntTSL 3 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC063952.4-201ENST00000634744 825 ntTSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC241377.2-202ENST00000636462 997 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 AC233280.20-201ENST00000637412 416 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 RPGRIP1L-206ENST00000564374 3877 ntTSL 2 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 HSPA8P11-201ENST00000508840 1898 ntBASIC6.93□□□□□ -1.3
VMP1Q96GC9 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 DCLRE1C-211ENST00000396817 2761 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 FER1L6-201ENST00000522917 6051 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 NT5C3A-201ENST00000242210 1670 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 SPANXN2-201ENST00000598475 1378 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
VMP1Q96GC9 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 TMEM155-203ENST00000394396 2032 ntAPPRIS P2 TSL 2 BASIC6.93□□□□□ -1.3
VMP1Q96GC9 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 TOPORSLP1-201ENST00000467693 2102 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 FGFR2-213ENST00000369061 3803 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 IFNA14-201ENST00000380222 990 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 TMEM213-201ENST00000397602 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 TAS2R2P-201ENST00000421146 910 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 EEF1GP7-201ENST00000422983 703 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 AL031316.1-202ENST00000441672 449 ntTSL 3 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 FUNDC2P2-202ENST00000443452 493 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 MGAT2P1-201ENST00000449718 797 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 MRPL57P6-201ENST00000506570 309 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC138409.2-202ENST00000507274 458 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC025176.1-201ENST00000510261 365 ntTSL 4 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC111000.1-201ENST00000514545 713 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 IGKV2-29-201ENST00000521304 372 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC026979.2-201ENST00000523733 583 ntTSL 5 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 LINC00964-204ENST00000528090 572 ntTSL 4 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 OR6M3P-201ENST00000531567 700 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC078950.1-201ENST00000538349 550 ntTSL 4 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC068631.3-201ENST00000538831 225 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC105275.2-201ENST00000567907 711 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC080112.3-201ENST00000612552 880 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 AL391425.1-201ENST00000613658 807 ntTSL 5 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC017000.1-201ENST00000639380 578 ntTSL 5 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 ABCD3-202ENST00000370214 3538 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 CDC40-201ENST00000307731 3848 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 C14orf105-201ENST00000216445 3082 ntAPPRIS P3 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 SLC4A8-202ENST00000358657 11731 ntAPPRIS ALT2 TSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC6.92□□□□□ -1.3
VMP1Q96GC9 TBX5-202ENST00000349716 3585 ntTSL 1 (best) BASIC6.92□□□□□ -1.3
VMP1Q96GC9 CYP2G2P-201ENST00000594920 1485 ntBASIC6.92□□□□□ -1.3
VMP1Q96GC9 RND3-202ENST00000375734 2777 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
VMP1Q96GC9 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
VMP1Q96GC9 SERPINA9-205ENST00000448305 1520 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms