Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PPIAP30-201ENST00000415473 519 ntBASIC5.88□□□□□ -1.47
CDX1P47902 RPL5P28-201ENST00000418634 693 ntBASIC5.88□□□□□ -1.47
CDX1P47902 AL354794.2-201ENST00000424795 1248 ntBASIC5.88□□□□□ -1.47
CDX1P47902 SNX18P3-201ENST00000424993 835 ntBASIC5.88□□□□□ -1.47
CDX1P47902 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC5.88□□□□□ -1.47
CDX1P47902 NEURL1-AS1-201ENST00000447820 439 ntTSL 2 BASIC5.88□□□□□ -1.47
CDX1P47902 AC104389.2-201ENST00000450768 887 ntBASIC5.88□□□□□ -1.47
CDX1P47902 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC5.88□□□□□ -1.47
CDX1P47902 OR7L1P-201ENST00000456181 380 ntBASIC5.88□□□□□ -1.47
CDX1P47902 AC013787.1-201ENST00000460165 307 ntBASIC5.88□□□□□ -1.47
CDX1P47902 RN7SL145P-201ENST00000469955 296 ntBASIC5.88□□□□□ -1.47
CDX1P47902 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC5.88□□□□□ -1.47
CDX1P47902 RN7SL516P-201ENST00000496127 297 ntBASIC5.88□□□□□ -1.47
CDX1P47902 LINC02059-201ENST00000503843 452 ntTSL 3 BASIC5.88□□□□□ -1.47
CDX1P47902 MRPL49P1-201ENST00000505951 535 ntBASIC5.88□□□□□ -1.47
CDX1P47902 HMMR-AS1-201ENST00000514724 697 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 TPT1-AS1-213ENST00000521336 759 ntTSL 5 BASIC5.88□□□□□ -1.47
CDX1P47902 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 OR7E96P-201ENST00000530816 976 ntBASIC5.88□□□□□ -1.47
CDX1P47902 FXYD2-206ENST00000532119 562 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
CDX1P47902 ORMDL2-203ENST00000548974 671 ntAPPRIS P1 TSL 2 BASIC5.88□□□□□ -1.47
CDX1P47902 COX4I1P1-201ENST00000554239 509 ntBASIC5.88□□□□□ -1.47
CDX1P47902 SUPT16H-204ENST00000555943 915 ntTSL 2 BASIC5.88□□□□□ -1.47
CDX1P47902 AC135626.1-201ENST00000556983 435 ntBASIC5.88□□□□□ -1.47
CDX1P47902 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC5.88□□□□□ -1.47
CDX1P47902 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.88□□□□□ -1.47
CDX1P47902 STX8-209ENST00000574431 731 ntTSL 3 BASIC5.88□□□□□ -1.47
CDX1P47902 AC036222.1-201ENST00000579972 701 ntTSL 3 BASIC5.88□□□□□ -1.47
CDX1P47902 OR5AH1P-201ENST00000595968 283 ntBASIC5.88□□□□□ -1.47
CDX1P47902 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC5.88□□□□□ -1.47
CDX1P47902 AL713998.2-201ENST00000604538 1198 ntBASIC5.88□□□□□ -1.47
CDX1P47902 SNORA35B-201ENST00000607417 129 ntBASIC5.88□□□□□ -1.47
CDX1P47902 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC5.88□□□□□ -1.47
CDX1P47902 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.88□□□□□ -1.47
CDX1P47902 AC135050.6-202ENST00000613584 392 ntBASIC5.88□□□□□ -1.47
CDX1P47902 Metazoa_SRP.167-201ENST00000614947 260 ntBASIC5.88□□□□□ -1.47
CDX1P47902 DLST-216ENST00000626051 252 ntTSL 5 BASIC5.88□□□□□ -1.47
CDX1P47902 AL359745.1-201ENST00000626943 760 ntTSL 5 BASIC5.88□□□□□ -1.47
CDX1P47902 HBG1-202ENST00000632727 369 ntTSL 3 BASIC5.88□□□□□ -1.47
CDX1P47902 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 C15orf41-202ENST00000437989 2240 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 MFSD8-227ENST00000641393 4069 ntBASIC5.88□□□□□ -1.47
CDX1P47902 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 LINC01087-201ENST00000431979 3516 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 KCNQ3-205ENST00000621976 10659 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
CDX1P47902 SLF2-202ENST00000370269 3712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 AL662795.2-201ENST00000624252 3706 ntBASIC5.88□□□□□ -1.47
CDX1P47902 ZNF385B-202ENST00000409343 2750 ntTSL 2 BASIC5.88□□□□□ -1.47
CDX1P47902 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 GPR19-201ENST00000332427 1743 ntAPPRIS P1 TSL 4 BASIC5.88□□□□□ -1.47
CDX1P47902 ESRRG-221ENST00000493603 5304 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CDX1P47902 CCDC30-202ENST00000342022 3098 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
CDX1P47902 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC5.87□□□□□ -1.47
CDX1P47902 MUC4-215ENST00000475231 16273 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 NACA-203ENST00000454682 6629 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 SLC14A1-221ENST00000619403 3823 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 AC110597.1-201ENST00000562669 3176 ntBASIC5.87□□□□□ -1.47
CDX1P47902 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 INSL5-201ENST00000304526 715 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 RN7SKP211-201ENST00000363328 315 ntBASIC5.87□□□□□ -1.47
CDX1P47902 RGS8-203ENST00000367557 859 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 AC113608.1-201ENST00000398740 305 ntBASIC5.87□□□□□ -1.47
CDX1P47902 RPL23AP18-201ENST00000416139 468 ntBASIC5.87□□□□□ -1.47
CDX1P47902 VN1R35P-201ENST00000428102 693 ntBASIC5.87□□□□□ -1.47
CDX1P47902 AC068759.1-201ENST00000447709 470 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 AC013429.1-201ENST00000456604 422 ntBASIC5.87□□□□□ -1.47
CDX1P47902 RN7SL325P-201ENST00000460434 283 ntBASIC5.87□□□□□ -1.47
CDX1P47902 AC018475.1-201ENST00000478358 465 ntBASIC5.87□□□□□ -1.47
CDX1P47902 AC135999.1-201ENST00000478962 479 ntBASIC5.87□□□□□ -1.47
CDX1P47902 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.87□□□□□ -1.47
CDX1P47902 RN7SL182P-201ENST00000496499 300 ntBASIC5.87□□□□□ -1.47
CDX1P47902 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC5.87□□□□□ -1.47
CDX1P47902 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
CDX1P47902 AC022441.1-201ENST00000512599 794 ntTSL 3 BASIC5.87□□□□□ -1.47
CDX1P47902 AC106800.2-201ENST00000514009 1103 ntBASIC5.87□□□□□ -1.47
CDX1P47902 LACTB2-AS1-204ENST00000519167 793 ntTSL 3 BASIC5.87□□□□□ -1.47
CDX1P47902 AC090539.2-201ENST00000523425 671 ntBASIC5.87□□□□□ -1.47
CDX1P47902 AC025857.1-201ENST00000525252 377 ntBASIC5.87□□□□□ -1.47
CDX1P47902 GTF2IP11-201ENST00000526931 420 ntBASIC5.87□□□□□ -1.47
CDX1P47902 AC023595.1-201ENST00000536216 564 ntTSL 4 BASIC5.87□□□□□ -1.47
CDX1P47902 TRAV11-201ENST00000539512 339 ntBASIC5.87□□□□□ -1.47
CDX1P47902 CLEC4E-206ENST00000545274 730 ntTSL 3 BASIC5.87□□□□□ -1.47
CDX1P47902 AC073571.1-201ENST00000549103 475 ntTSL 3 BASIC5.87□□□□□ -1.47
CDX1P47902 AL049869.4-201ENST00000555669 178 ntBASIC5.87□□□□□ -1.47
CDX1P47902 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC5.87□□□□□ -1.47
CDX1P47902 APEX1-214ENST00000557054 888 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 DPPA3P2-202ENST00000557188 1219 ntBASIC5.87□□□□□ -1.47
CDX1P47902 AC012291.1-201ENST00000559666 429 ntTSL 5 BASIC5.87□□□□□ -1.47
CDX1P47902 TRIM69-210ENST00000561043 1017 ntTSL 3 BASIC5.87□□□□□ -1.47
CDX1P47902 AC026992.2-201ENST00000570122 766 ntTSL 5 BASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms