Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PRSS3P3-201ENST00000612253 692 ntTSL 5 BASIC7.44□□□□□ -1.22
APOEP02649 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC7.44□□□□□ -1.22
APOEP02649 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC7.44□□□□□ -1.22
APOEP02649 PYHIN1-204ENST00000392252 1597 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
APOEP02649 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC7.44□□□□□ -1.22
APOEP02649 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC7.44□□□□□ -1.22
APOEP02649 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
APOEP02649 SMAD1-202ENST00000394092 1658 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
APOEP02649 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC7.44□□□□□ -1.22
APOEP02649 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC7.44□□□□□ -1.22
APOEP02649 VNN3-202ENST00000367927 1717 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.22
APOEP02649 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 NUP43-201ENST00000340413 3874 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 PPP2R5C-205ENST00000445439 1526 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 ABLIM1-202ENST00000369252 7690 ntTSL 5 BASIC7.43□□□□□ -1.22
APOEP02649 ST6GAL1-211ENST00000448044 4302 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC7.43□□□□□ -1.22
APOEP02649 ZNF211-202ENST00000254182 1959 ntTSL 2 BASIC7.43□□□□□ -1.22
APOEP02649 CLEC1B-202ENST00000348658 869 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 MIR152-201ENST00000385212 87 ntBASIC7.43□□□□□ -1.22
APOEP02649 SOD1P1-201ENST00000407803 440 ntBASIC7.43□□□□□ -1.22
APOEP02649 SNORA11D-201ENST00000408548 128 ntBASIC7.43□□□□□ -1.22
APOEP02649 SNORA11E-201ENST00000408778 128 ntBASIC7.43□□□□□ -1.22
APOEP02649 CYTOR-207ENST00000414584 772 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC7.43□□□□□ -1.22
APOEP02649 AL157698.1-201ENST00000415190 1011 ntBASIC7.43□□□□□ -1.22
APOEP02649 AL022100.2-201ENST00000422548 389 ntTSL 3 BASIC7.43□□□□□ -1.22
APOEP02649 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC7.43□□□□□ -1.22
APOEP02649 LINC01431-203ENST00000452395 505 ntTSL 2 BASIC7.43□□□□□ -1.22
APOEP02649 RN7SL456P-201ENST00000469290 295 ntBASIC7.43□□□□□ -1.22
APOEP02649 AF305872.1-201ENST00000485217 471 ntBASIC7.43□□□□□ -1.22
APOEP02649 RN7SL797P-201ENST00000486314 297 ntBASIC7.43□□□□□ -1.22
APOEP02649 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC7.43□□□□□ -1.22
APOEP02649 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC7.43□□□□□ -1.22
APOEP02649 AC040934.1-201ENST00000523101 513 ntTSL 2 BASIC7.43□□□□□ -1.22
APOEP02649 PDCL3P1-201ENST00000534575 734 ntBASIC7.43□□□□□ -1.22
APOEP02649 AC005833.3-202ENST00000544741 770 ntAPPRIS P1 TSL 3 BASIC7.43□□□□□ -1.22
APOEP02649 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC7.43□□□□□ -1.22
APOEP02649 C16orf62-224ENST00000567245 573 ntTSL 5 BASIC7.43□□□□□ -1.22
APOEP02649 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC7.43□□□□□ -1.22
APOEP02649 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC7.43□□□□□ -1.22
APOEP02649 AC243725.1-201ENST00000637164 436 ntBASIC7.43□□□□□ -1.22
APOEP02649 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 CD300E-201ENST00000392619 3501 ntAPPRIS P2 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC7.43□□□□□ -1.22
APOEP02649 CORIN-201ENST00000273857 4852 ntAPPRIS P2 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 CACNA1E-209ENST00000621551 14886 ntAPPRIS ALT2 TSL 5 BASIC7.43□□□□□ -1.22
APOEP02649 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
APOEP02649 AL160408.3-201ENST00000442382 3564 ntTSL 2 BASIC7.43□□□□□ -1.22
APOEP02649 CIR1-201ENST00000342016 1921 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
APOEP02649 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
APOEP02649 KCNMB3P1-202ENST00000493696 3389 ntBASIC7.42□□□□□ -1.22
APOEP02649 AC244100.2-202ENST00000612584 3878 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
APOEP02649 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC7.42□□□□□ -1.22
APOEP02649 AC090771.1-201ENST00000585803 1618 ntBASIC7.42□□□□□ -1.22
APOEP02649 SPECC1L-207ENST00000541492 3525 ntTSL 2 BASIC7.42□□□□□ -1.22
APOEP02649 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC7.42□□□□□ -1.22
APOEP02649 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
APOEP02649 ZNF880-202ENST00000422689 2230 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
APOEP02649 DEFB4A-201ENST00000302247 380 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
APOEP02649 RNU12-2P-201ENST00000364789 156 ntBASIC7.42□□□□□ -1.22
APOEP02649 SNORA70.5-201ENST00000365519 135 ntBASIC7.42□□□□□ -1.22
APOEP02649 FAM204BP-201ENST00000369171 701 ntBASIC7.42□□□□□ -1.22
APOEP02649 MIR1204-201ENST00000408388 67 ntBASIC7.42□□□□□ -1.22
APOEP02649 AL157932.1-201ENST00000413246 363 ntTSL 3 BASIC7.42□□□□□ -1.22
APOEP02649 AC009362.1-201ENST00000427253 406 ntBASIC7.42□□□□□ -1.22
APOEP02649 RPLP0P1-201ENST00000457002 361 ntBASIC7.42□□□□□ -1.22
APOEP02649 RPS10P28-201ENST00000480396 498 ntBASIC7.42□□□□□ -1.22
APOEP02649 AC025271.1-201ENST00000485045 429 ntBASIC7.42□□□□□ -1.22
APOEP02649 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC7.42□□□□□ -1.22
APOEP02649 AC112225.1-201ENST00000508230 297 ntBASIC7.42□□□□□ -1.22
APOEP02649 AC146944.3-201ENST00000509969 371 ntBASIC7.42□□□□□ -1.22
APOEP02649 SCARNA18.2-201ENST00000516882 84 ntBASIC7.42□□□□□ -1.22
APOEP02649 GLYATL1P4-201ENST00000529326 906 ntBASIC7.42□□□□□ -1.22
APOEP02649 AC021979.2-201ENST00000553644 209 ntTSL 5 BASIC7.42□□□□□ -1.22
APOEP02649 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC7.42□□□□□ -1.22
APOEP02649 AC092960.1-201ENST00000604762 351 ntBASIC7.42□□□□□ -1.22
APOEP02649 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC7.42□□□□□ -1.22
APOEP02649 AL121782.1-201ENST00000611242 413 ntBASIC7.42□□□□□ -1.22
APOEP02649 AL121985.3-201ENST00000620690 523 ntBASIC7.42□□□□□ -1.22
APOEP02649 AC093909.6-201ENST00000624757 775 ntBASIC7.42□□□□□ -1.22
APOEP02649 AL353572.3-201ENST00000636536 670 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
APOEP02649 AL356585.10-201ENST00000641883 123 ntBASIC7.42□□□□□ -1.22
APOEP02649 EEF1A1P20-201ENST00000514852 1386 ntBASIC7.42□□□□□ -1.22
APOEP02649 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
APOEP02649 PPP4R3CP-201ENST00000412172 3131 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
APOEP02649 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC7.42□□□□□ -1.22
APOEP02649 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
APOEP02649 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC7.42□□□□□ -1.22
APOEP02649 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
APOEP02649 FOCAD-216ENST00000605086 4195 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
APOEP02649 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC7.41□□□□□ -1.22
APOEP02649 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC7.41□□□□□ -1.22
APOEP02649 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms