Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MIR5192-201ENST00000579892 92 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 ZNF675-202ENST00000596211 581 ntTSL 4 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AL109936.2-201ENST00000605350 650 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 AL669942.1-206ENST00000610473 783 ntTSL 3 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC006335.3-201ENST00000613408 292 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 BX005195.1-201ENST00000618097 1198 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 TPT1-AS1-221ENST00000618947 520 ntTSL 3 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC068234.2-201ENST00000619646 522 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 AL049536.1-202ENST00000623572 455 ntTSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AL590396.3-201ENST00000636334 300 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC022167.5-202ENST00000637237 701 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AC087269.2-201ENST00000641764 975 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 MAGT1-204ENST00000610432 4019 ntAPPRIS P2 TSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 IFT80-225ENST00000496589 3073 ntTSL 2 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 OR52B5P-204ENST00000641744 3467 ntBASIC6.19□□□□□ -1.42
NKX3-1Q99801 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
NKX3-1Q99801 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
NKX3-1Q99801 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 HCFC2P1-201ENST00000392864 1592 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 TRIM60P14-201ENST00000513444 1419 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 GUCY2C-201ENST00000261170 3844 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 RNA5SP238-201ENST00000365464 120 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 ALOX5AP-201ENST00000380490 904 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 C1QTNF9B-203ENST00000382145 888 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 TRAV5-201ENST00000390427 352 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AL137058.2-203ENST00000398039 825 ntTSL 3 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 PGM5-AS1-202ENST00000420855 572 ntTSL 3 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 TAS2R2P-201ENST00000421146 910 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 LINC00462-201ENST00000425350 962 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 OSTN-AS1-201ENST00000430375 515 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 LINC01747-201ENST00000437696 1067 ntTSL 2 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC098483.1-201ENST00000438623 955 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC114755.1-201ENST00000453101 868 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 LINC00518-202ENST00000479822 906 ntTSL 3 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC097375.1-201ENST00000507949 488 ntTSL 3 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC105999.2-203ENST00000521030 663 ntTSL 3 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 RGS5-220ENST00000528689 566 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AL162171.2-201ENST00000555444 905 ntTSL 3 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC007611.1-202ENST00000564212 854 ntTSL 3 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC005899.3-201ENST00000580360 271 ntTSL 3 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 MIR4786-201ENST00000583954 80 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 TTN-AS1-215ENST00000585451 949 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 INTS6-AS1-218ENST00000598905 906 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC013731.1-201ENST00000604340 883 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 AL355333.1-201ENST00000605632 279 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 XPNPEP3-206ENST00000614001 230 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC018558.4-201ENST00000622153 281 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 METAP1-212ENST00000625963 147 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 TTN-AS1-265ENST00000627661 806 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AP000842.4-201ENST00000638781 748 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 TMEM14EP-202ENST00000639378 1296 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 OR10R2-202ENST00000641067 1132 ntAPPRIS ALT2 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 OR10R2-203ENST00000641400 975 ntAPPRIS ALT2 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 SOX5-205ENST00000451604 4261 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AL021396.1-202ENST00000457707 1929 ntTSL 2 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 FGG-204ENST00000405164 1539 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AL596244.1-201ENST00000567068 3779 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 CCR3-202ENST00000395940 1581 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
NKX3-1Q99801 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 AC112243.1-201ENST00000623949 3851 ntBASIC6.18□□□□□ -1.42
NKX3-1Q99801 ZC3H11B-201ENST00000367211 2994 ntAPPRIS P5 TSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 COPS3-203ENST00000439936 1394 ntTSL 5 BASIC6.18□□□□□ -1.42
NKX3-1Q99801 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 SEMA3A-204ENST00000436949 2550 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AQP4-AS1-202ENST00000578701 2177 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AC083806.2-201ENST00000617795 2685 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AC007406.5-201ENST00000570140 3170 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 TPTE2P2-201ENST00000403471 1466 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 OLR1-201ENST00000309539 2462 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 HIST1H2BA-201ENST00000274764 516 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 S100A5-202ENST00000368718 710 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
NKX3-1Q99801 TRBV9-201ENST00000390363 390 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 AC226101.1-201ENST00000401483 387 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 AC090617.1-201ENST00000413674 323 ntTSL 2 BASIC6.17□□□□□ -1.42
NKX3-1Q99801 TRGV5P-201ENST00000419915 354 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 PPIL1P1-201ENST00000423936 499 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 RPSAP62-201ENST00000432596 833 ntBASIC6.17□□□□□ -1.42
NKX3-1Q99801 LINC01732-201ENST00000435023 542 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms