Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 MIR718-201ENST00000390190 70 ntBASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CCDC60Q8IWA6 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 F2R-202ENST00000505600 442 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 REXO2-216ENST00000544196 452 ntTSL 3 BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CCDC60Q8IWA6 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 NBPF21P-201ENST00000425093 1451 ntBASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 TREX2-204ENST00000370212 861 ntTSL 5 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
CCDC60Q8IWA6 AC020907.5-201ENST00000624372 1936 ntBASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 MDFI-202ENST00000373050 809 ntTSL 2 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 CALM3-202ENST00000391918 702 ntTSL 2 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 RPS2P55-201ENST00000397318 883 ntBASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 AC012618.2-201ENST00000428058 849 ntBASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 AC107956.1-201ENST00000494359 873 ntBASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 AC233702.5-201ENST00000584107 538 ntBASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 CABP2-204ENST00000636477 941 ntTSL 5 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.15
CCDC60Q8IWA6 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 DET1-207ENST00000564406 2315 ntTSL 2 BASIC22.22■■□□□ 1.15
CCDC60Q8IWA6 CLDN5-201ENST00000403084 2357 ntBASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
CCDC60Q8IWA6 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms