Protein–RNA interactions for Protein: Q08474

VAM10, Vacuolar morphogenesis protein 10, yeast

Predictions only

Length 114 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
VAM10	Q08474	YER053C-A	YER053C-A	114 nt		-0.54	□□□□□ -2.5
VAM10	Q08474	YIR030W-A	YIR030W-A	384 nt		-0.54	□□□□□ -2.5
VAM10	Q08474	CSE2	YNR010W	450 nt		-0.54	□□□□□ -2.5
VAM10	Q08474	URB1	YKL014C	5295 nt		-0.54	□□□□□ -2.5
VAM10	Q08474	GLG1	YKR058W	1851 nt		-0.55	□□□□□ -2.5
VAM10	Q08474	SDH6	YDR379C-A	240 nt		-0.57	□□□□□ -2.5
VAM10	Q08474	YLR406C-A	YLR406C-A	150 nt		-0.57	□□□□□ -2.5
VAM10	Q08474	AGA2	YGL032C	264 nt		-0.58	□□□□□ -2.5
VAM10	Q08474	YLL019W-A	YLL019W-A	93 nt		-0.58	□□□□□ -2.5
VAM10	Q08474	tW(UCA)Q	tW(UCA)Q	74 nt		-0.6	□□□□□ -2.51
VAM10	Q08474	YJL197C-A	YJL197C-A	282 nt		-0.6	□□□□□ -2.51
VAM10	Q08474	YPR016W-A	YPR016W-A	261 nt		-0.6	□□□□□ -2.51
VAM10	Q08474	YDL007C-A	YDL007C-A	258 nt		-0.61	□□□□□ -2.51
VAM10	Q08474	YER137W-A	YER137W-A	306 nt		-0.61	□□□□□ -2.51
VAM10	Q08474	YIL071W-A	YIL071W-A	477 nt		-0.61	□□□□□ -2.51
VAM10	Q08474	YLR264C-A	YLR264C-A	117 nt		-0.61	□□□□□ -2.51
VAM10	Q08474	YMR193C-A	YMR193C-A	387 nt		-0.61	□□□□□ -2.51
VAM10	Q08474	YNL067W-B	YNL067W-B	141 nt		-0.61	□□□□□ -2.51
VAM10	Q08474	TAH1	YCR060W	336 nt		-0.62	□□□□□ -2.51
VAM10	Q08474	YDR048C	YDR048C	315 nt		-0.62	□□□□□ -2.51
VAM10	Q08474	YMR001C-A	YMR001C-A	231 nt		-0.63	□□□□□ -2.51
VAM10	Q08474	YER079W	YER079W	633 nt		-0.64	□□□□□ -2.51
VAM10	Q08474	YOR121C	YOR121C	306 nt		-0.64	□□□□□ -2.51
VAM10	Q08474	YDL158C	YDL158C	309 nt		-0.65	□□□□□ -2.51
VAM10	Q08474	HMRA1	YCR097W	381 nt		-0.66	□□□□□ -2.52
VAM10	Q08474	APQ12	YIL040W	417 nt		-0.66	□□□□□ -2.52
VAM10	Q08474	YML100W-A	YML100W-A	174 nt		-0.68	□□□□□ -2.52
VAM10	Q08474	YBR285W	YBR285W	435 nt		-0.68	□□□□□ -2.52
VAM10	Q08474	RPM2	YML091C	3609 nt		-0.69	□□□□□ -2.52
VAM10	Q08474	YIL002W-A	YIL002W-A	210 nt		-0.69	□□□□□ -2.52
VAM10	Q08474	tA(UGC)Q	tA(UGC)Q	76 nt		-0.7	□□□□□ -2.52
VAM10	Q08474	YEL050W-A	YEL050W-A	192 nt		-0.7	□□□□□ -2.52
VAM10	Q08474	YLR202C	YLR202C	327 nt		-0.71	□□□□□ -2.52
VAM10	Q08474	snR60	snR60	104 nt		-0.72	□□□□□ -2.52
VAM10	Q08474	YKL063C	YKL063C	504 nt		-0.72	□□□□□ -2.52
VAM10	Q08474	YOR072W-B	YOR072W-B	162 nt		-0.72	□□□□□ -2.52
VAM10	Q08474	YHL009W-B	YHL009W-B	5409 nt		-0.73	□□□□□ -2.53
VAM10	Q08474	YCR038W-A	YCR038W-A	126 nt		-0.73	□□□□□ -2.53
VAM10	Q08474	YDR544C	YDR544C	429 nt		-0.73	□□□□□ -2.53
VAM10	Q08474	snR36	snR36	182 nt		-0.73	□□□□□ -2.53
VAM10	Q08474	COG6	YNL041C	2520 nt		-0.74	□□□□□ -2.53
VAM10	Q08474	YOR015W	YOR015W	360 nt		-0.75	□□□□□ -2.53
VAM10	Q08474	PAU9	YBL108C-A	129 nt		-0.76	□□□□□ -2.53
VAM10	Q08474	BIL1	YOR304C-A	231 nt		-0.77	□□□□□ -2.53
VAM10	Q08474	snR189	snR189	189 nt		-0.78	□□□□□ -2.53
VAM10	Q08474	snR33	snR33	183 nt		-0.78	□□□□□ -2.53
VAM10	Q08474	YGL149W	YGL149W	306 nt		-0.8	□□□□□ -2.54
VAM10	Q08474	HTL1	YCR020W-B	237 nt		-0.81	□□□□□ -2.54
VAM10	Q08474	YIL032C	YIL032C	357 nt		-0.81	□□□□□ -2.54
VAM10	Q08474	snR74	snR74	88 nt		-0.82	□□□□□ -2.54
VAM10	Q08474	YNL324W	YNL324W	396 nt		-0.82	□□□□□ -2.54
VAM10	Q08474	YML099W-A	YML099W-A	330 nt		-0.83	□□□□□ -2.54
VAM10	Q08474	YBL039C-A	YBL039C-A	84 nt		-0.83	□□□□□ -2.54
VAM10	Q08474	YOR314W-A	YOR314W-A	111 nt		-0.83	□□□□□ -2.54
VAM10	Q08474	YGL052W	YGL052W	306 nt		-0.84	□□□□□ -2.54
VAM10	Q08474	YAL068W-A	YAL068W-A	255 nt		-0.84	□□□□□ -2.54
VAM10	Q08474	YLR120W-A	YLR120W-A	102 nt		-0.84	□□□□□ -2.54
VAM10	Q08474	YNL028W	YNL028W	318 nt		-0.84	□□□□□ -2.54
VAM10	Q08474	YOR170W	YOR170W	306 nt		-0.84	□□□□□ -2.54
VAM10	Q08474	YGR035C	YGR035C	351 nt		-0.85	□□□□□ -2.55
VAM10	Q08474	YOR293C-A	YOR293C-A	150 nt		-0.85	□□□□□ -2.55
VAM10	Q08474	ATP6	Q0085	780 nt		-0.88	□□□□□ -2.55
VAM10	Q08474	YJL077W-A	YJL077W-A	87 nt		-0.88	□□□□□ -2.55
VAM10	Q08474	tT(UGU)G1	tT(UGU)G1	72 nt		-0.89	□□□□□ -2.55
VAM10	Q08474	tT(UGU)G2	tT(UGU)G2	72 nt		-0.89	□□□□□ -2.55
VAM10	Q08474	tT(UGU)P	tT(UGU)P	72 nt		-0.89	□□□□□ -2.55
VAM10	Q08474	YJL182C	YJL182C	318 nt		-0.89	□□□□□ -2.55
VAM10	Q08474	YAF9	YNL107W	681 nt		-0.89	□□□□□ -2.55
VAM10	Q08474	YJR157W	YJR157W	363 nt		-0.91	□□□□□ -2.56
VAM10	Q08474	YPR010C-A	YPR010C-A	219 nt		-0.91	□□□□□ -2.56
VAM10	Q08474	YDR102C	YDR102C	333 nt		-0.92	□□□□□ -2.56
VAM10	Q08474	tQ(UUG)Q	tQ(UUG)Q	76 nt		-0.92	□□□□□ -2.56
VAM10	Q08474	YAL063C-A	YAL063C-A	291 nt		-0.92	□□□□□ -2.56
VAM10	Q08474	YLR154W-F	YLR154W-F	141 nt		-0.92	□□□□□ -2.56
VAM10	Q08474	snR49	snR49	165 nt		-0.92	□□□□□ -2.56
VAM10	Q08474	YAL016C-B	YAL016C-B	186 nt		-0.93	□□□□□ -2.56
VAM10	Q08474	YMR172C-A	YMR172C-A	384 nt		-0.93	□□□□□ -2.56
VAM10	Q08474	YGL182C	YGL182C	324 nt		-0.97	□□□□□ -2.56
VAM10	Q08474	YDR183C-A	YDR183C-A	258 nt		-0.98	□□□□□ -2.57
VAM10	Q08474	snR69	snR69	101 nt		-0.99	□□□□□ -2.57
VAM10	Q08474	YFL032W	YFL032W	321 nt		-0.99	□□□□□ -2.57
VAM10	Q08474	YER090C-A	YER090C-A	90 nt		-1.01	□□□□□ -2.57
VAM10	Q08474	YNL266W	YNL266W	420 nt		-1.03	□□□□□ -2.57
VAM10	Q08474	YGL041C	YGL041C	204 nt		-1.05	□□□□□ -2.58
VAM10	Q08474	snR50	snR50	90 nt		-1.06	□□□□□ -2.58
VAM10	Q08474	JLP2	YMR132C	627 nt		-1.07	□□□□□ -2.58
VAM10	Q08474	YNR077C	YNR077C	255 nt		-1.08	□□□□□ -2.58
VAM10	Q08474	snR161	snR161	161 nt		-1.09	□□□□□ -2.58
VAM10	Q08474	YER097W	YER097W	330 nt		-1.1	□□□□□ -2.59
VAM10	Q08474	YFL019C	YFL019C	354 nt		-1.1	□□□□□ -2.59
VAM10	Q08474	YOR381W-A	YOR381W-A	168 nt		-1.11	□□□□□ -2.59
VAM10	Q08474	RDS3	YPR094W	324 nt		-1.11	□□□□□ -2.59
VAM10	Q08474	YBR223W-A	YBR223W-A	120 nt		-1.11	□□□□□ -2.59
VAM10	Q08474	tM(CAU)Q2	tM(CAU)Q2	78 nt		-1.12	□□□□□ -2.59
VAM10	Q08474	YEL014C	YEL014C	306 nt		-1.13	□□□□□ -2.59
VAM10	Q08474	YBR182C-A	YBR182C-A	195 nt		-1.13	□□□□□ -2.59
VAM10	Q08474	tF(GAA)Q	tF(GAA)Q	75 nt		-1.14	□□□□□ -2.59
VAM10	Q08474	PMP2	YEL017C-A	132 nt		-1.14	□□□□□ -2.59
VAM10	Q08474	YPR197C	YPR197C	564 nt		-1.14	□□□□□ -2.59
VAM10	Q08474	YGR146C-A	YGR146C-A	162 nt		-1.15	□□□□□ -2.59

Retrieved 100 of 7,029 protein–RNA pairs in 45 ms