Protein–RNA interactions for Protein: P54000

SUB1, RNA polymerase II transcriptional coactivator SUB1, yeastyeast

Known RBP Predictions only

Length 292 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SUB1P54000 YDL240C-AYDL240C-A 138 nt0.22□□□□□ -2.37
SUB1P54000 MYO1YHR023W 5787 nt0.22□□□□□ -2.37
SUB1P54000 snR36snR36 182 nt0.21□□□□□ -2.38
SUB1P54000 YLL006W-AYLL006W-A 177 nt0.2□□□□□ -2.38
SUB1P54000 YKL145W-AYKL145W-A 93 nt0.18□□□□□ -2.38
SUB1P54000 YOR072W-BYOR072W-B 162 nt0.18□□□□□ -2.38
SUB1P54000 YOR186C-AYOR186C-A 210 nt0.18□□□□□ -2.38
SUB1P54000 SNU13YEL026W 381 nt0.17□□□□□ -2.38
SUB1P54000 STE5YDR103W 2754 nt0.16□□□□□ -2.38
SUB1P54000 YDR366CYDR366C 399 nt0.16□□□□□ -2.38
SUB1P54000 YLR120W-AYLR120W-A 102 nt0.16□□□□□ -2.38
SUB1P54000 YOR015WYOR015W 360 nt0.16□□□□□ -2.38
SUB1P54000 TRS65YGR166W 1683 nt0.15□□□□□ -2.39
SUB1P54000 RPS30BYOR182C 192 nt0.14□□□□□ -2.39
SUB1P54000 YFL032WYFL032W 321 nt0.13□□□□□ -2.39
SUB1P54000 COX12YLR038C 252 nt0.13□□□□□ -2.39
SUB1P54000 YKU70YMR284W 1809 nt0.13□□□□□ -2.39
SUB1P54000 RPL39YJL189W 156 nt0.11□□□□□ -2.39
SUB1P54000 AI1Q0050 2505 nt0.09□□□□□ -2.4
SUB1P54000 YEL073CYEL073C 324 nt0.08□□□□□ -2.4
SUB1P54000 YER053C-AYER053C-A 114 nt0.08□□□□□ -2.4
SUB1P54000 YDR413CYDR413C 576 nt0.07□□□□□ -2.4
SUB1P54000 YKL118WYKL118W 312 nt0.07□□□□□ -2.4
SUB1P54000 RAD61YDR014W 1944 nt0.07□□□□□ -2.4
SUB1P54000 snR74snR74 88 nt0.06□□□□□ -2.4
SUB1P54000 RPM2YML091C 3609 nt0.06□□□□□ -2.4
SUB1P54000 YMR172C-AYMR172C-A 384 nt0.05□□□□□ -2.4
SUB1P54000 HMRA1YCR097W 381 nt0.04□□□□□ -2.4
SUB1P54000 tF(GAA)BtF(GAA)B 73 nt0.04□□□□□ -2.4
SUB1P54000 tF(GAA)FtF(GAA)F 73 nt0.04□□□□□ -2.4
SUB1P54000 tF(GAA)GtF(GAA)G 73 nt0.04□□□□□ -2.4
SUB1P54000 tF(GAA)H1tF(GAA)H1 73 nt0.04□□□□□ -2.4
SUB1P54000 tF(GAA)H2tF(GAA)H2 73 nt0.04□□□□□ -2.4
SUB1P54000 tF(GAA)MtF(GAA)M 73 nt0.04□□□□□ -2.4
SUB1P54000 tF(GAA)P1tF(GAA)P1 73 nt0.04□□□□□ -2.4
SUB1P54000 tF(GAA)P2tF(GAA)P2 73 nt0.04□□□□□ -2.4
SUB1P54000 YER097WYER097W 330 nt0.04□□□□□ -2.4
SUB1P54000 YBR072C-AYBR072C-A 162 nt0.04□□□□□ -2.4
SUB1P54000 GIM4YEL003W 336 nt0.03□□□□□ -2.4
SUB1P54000 STF2YGR008C 255 nt0.03□□□□□ -2.4
SUB1P54000 YIL002W-AYIL002W-A 210 nt0.03□□□□□ -2.4
SUB1P54000 SOV1YMR066W 2697 nt0.03□□□□□ -2.4
SUB1P54000 YCR038W-AYCR038W-A 126 nt0.02□□□□□ -2.41
SUB1P54000 YGL052WYGL052W 306 nt0.02□□□□□ -2.41
SUB1P54000 YHR175W-AYHR175W-A 150 nt-0.01□□□□□ -2.41
SUB1P54000 YLR232WYLR232W 348 nt-0.02□□□□□ -2.41
SUB1P54000 YMR158W-BYMR158W-B 321 nt-0.02□□□□□ -2.41
SUB1P54000 YOR008C-AYOR008C-A 225 nt-0.02□□□□□ -2.41
SUB1P54000 UTP8YGR128C 2142 nt-0.03□□□□□ -2.41
SUB1P54000 HUG1YML058W-A 207 nt-0.04□□□□□ -2.42
SUB1P54000 GLG1YKR058W 1851 nt-0.04□□□□□ -2.42
SUB1P54000 CSE1YGL238W 2883 nt-0.04□□□□□ -2.42
SUB1P54000 snR56snR56 88 nt-0.05□□□□□ -2.42
SUB1P54000 SDH6YDR379C-A 240 nt-0.06□□□□□ -2.42
SUB1P54000 APQ12YIL040W 417 nt-0.06□□□□□ -2.42
SUB1P54000 YNL277W-AYNL277W-A 189 nt-0.07□□□□□ -2.42
SUB1P54000 TAH1YCR060W 336 nt-0.08□□□□□ -2.42
SUB1P54000 tR(ACG)Q2tR(ACG)Q2 74 nt-0.08□□□□□ -2.42
SUB1P54000 YIR030W-AYIR030W-A 384 nt-0.08□□□□□ -2.42
SUB1P54000 YDR544CYDR544C 429 nt-0.09□□□□□ -2.42
SUB1P54000 YOL014WYOL014W 375 nt-0.09□□□□□ -2.42
SUB1P54000 YBR099CYBR099C 384 nt-0.09□□□□□ -2.42
SUB1P54000 THO2YNL139C 4794 nt-0.09□□□□□ -2.42
SUB1P54000 YBR182C-AYBR182C-A 195 nt-0.11□□□□□ -2.43
SUB1P54000 snR128snR128 126 nt-0.12□□□□□ -2.43
SUB1P54000 YER078W-AYER078W-A 165 nt-0.14□□□□□ -2.43
SUB1P54000 COG6YNL041C 2520 nt-0.15□□□□□ -2.43
SUB1P54000 PRP39YML046W 1890 nt-0.15□□□□□ -2.43
SUB1P54000 snR8snR8 190 nt-0.15□□□□□ -2.43
SUB1P54000 tF(GAA)QtF(GAA)Q 75 nt-0.15□□□□□ -2.43
SUB1P54000 EST1YLR233C 2100 nt-0.15□□□□□ -2.43
SUB1P54000 YPL060C-AYPL060C-A 3315 nt-0.16□□□□□ -2.43
SUB1P54000 YGL041CYGL041C 204 nt-0.16□□□□□ -2.44
SUB1P54000 YBL039C-AYBL039C-A 84 nt-0.16□□□□□ -2.44
SUB1P54000 YPR010C-AYPR010C-A 219 nt-0.16□□□□□ -2.44
SUB1P54000 snR45snR45 172 nt-0.19□□□□□ -2.44
SUB1P54000 snR55snR55 98 nt-0.2□□□□□ -2.44
SUB1P54000 snR65snR65 100 nt-0.21□□□□□ -2.44
SUB1P54000 YER181CYER181C 324 nt-0.21□□□□□ -2.44
SUB1P54000 YBR131C-AYBR131C-A 90 nt-0.21□□□□□ -2.44
SUB1P54000 snR49snR49 165 nt-0.21□□□□□ -2.44
SUB1P54000 YGL182CYGL182C 324 nt-0.22□□□□□ -2.44
SUB1P54000 YML099W-AYML099W-A 330 nt-0.22□□□□□ -2.44
SUB1P54000 YOR314W-AYOR314W-A 111 nt-0.23□□□□□ -2.45
SUB1P54000 YDR524W-CYDR524W-C 90 nt-0.24□□□□□ -2.45
SUB1P54000 YEL014CYEL014C 306 nt-0.25□□□□□ -2.45
SUB1P54000 QCR9YGR183C 201 nt-0.26□□□□□ -2.45
SUB1P54000 YPL152W-AYPL152W-A 99 nt-0.27□□□□□ -2.45
SUB1P54000 YJL182CYJL182C 318 nt-0.28□□□□□ -2.45
SUB1P54000 YOL155W-AYOL155W-A 135 nt-0.28□□□□□ -2.45
SUB1P54000 YDR210WYDR210W 228 nt-0.29□□□□□ -2.46
SUB1P54000 SBH2YER019C-A 267 nt-0.29□□□□□ -2.46
SUB1P54000 YGR164WYGR164W 336 nt-0.31□□□□□ -2.46
SUB1P54000 YOR381W-AYOR381W-A 168 nt-0.32□□□□□ -2.46
SUB1P54000 TFB5YDR079C-A 219 nt-0.33□□□□□ -2.46
SUB1P54000 YNL097C-BYNL097C-B 123 nt-0.33□□□□□ -2.46
SUB1P54000 YOR302WYOR302W 78 nt-0.35□□□□□ -2.47
SUB1P54000 YOR231C-AYOR231C-A 201 nt-0.36□□□□□ -2.47
SUB1P54000 tM(CAU)Q2tM(CAU)Q2 78 nt-0.37□□□□□ -2.47
SUB1P54000 YOR170WYOR170W 306 nt-0.37□□□□□ -2.47
Retrieved 100 of 7,029 protein–RNA pairs in 13 ms