Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YOR161W-AYOR161W-A 81 nt0.74□□□□□ -2.29
UPF3P48412 YCR038W-AYCR038W-A 126 nt0.73□□□□□ -2.29
UPF3P48412 YJL127W-AYJL127W-A 117 nt0.73□□□□□ -2.29
UPF3P48412 STF2YGR008C 255 nt0.72□□□□□ -2.29
UPF3P48412 APQ12YIL040W 417 nt0.72□□□□□ -2.29
UPF3P48412 JLP2YMR132C 627 nt0.72□□□□□ -2.29
UPF3P48412 YER053C-AYER053C-A 114 nt0.71□□□□□ -2.3
UPF3P48412 YMR046W-AYMR046W-A 129 nt0.71□□□□□ -2.3
UPF3P48412 YIL002W-AYIL002W-A 210 nt0.7□□□□□ -2.3
UPF3P48412 YNL097C-BYNL097C-B 123 nt0.7□□□□□ -2.3
UPF3P48412 PRP42YDR235W 1635 nt0.7□□□□□ -2.3
UPF3P48412 HAL9YOL089C 3093 nt0.7□□□□□ -2.3
UPF3P48412 OST4YDL232W 111 nt0.69□□□□□ -2.3
UPF3P48412 HUG1YML058W-A 207 nt0.69□□□□□ -2.3
UPF3P48412 PRP5YBR237W 2550 nt0.69□□□□□ -2.3
UPF3P48412 YEL014CYEL014C 306 nt0.68□□□□□ -2.3
UPF3P48412 tM(CAU)Q1tM(CAU)Q1 76 nt0.68□□□□□ -2.3
UPF3P48412 PET111YMR257C 2403 nt0.68□□□□□ -2.3
UPF3P48412 YMR272W-AYMR272W-A 114 nt0.67□□□□□ -2.3
UPF3P48412 BEM3YPL115C 3387 nt0.67□□□□□ -2.3
UPF3P48412 MLP1YKR095W 5628 nt0.67□□□□□ -2.3
UPF3P48412 YDR406W-AYDR406W-A 246 nt0.66□□□□□ -2.3
UPF3P48412 YLR041WYLR041W 321 nt0.65□□□□□ -2.31
UPF3P48412 UTP8YGR128C 2142 nt0.65□□□□□ -2.31
UPF3P48412 tN(GUU)QtN(GUU)Q 71 nt0.64□□□□□ -2.31
UPF3P48412 YIL142C-AYIL142C-A 333 nt0.64□□□□□ -2.31
UPF3P48412 YSP1YHR155W 3687 nt0.63□□□□□ -2.31
UPF3P48412 UTP10YJL109C 5310 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)BtT(AGU)B 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)CtT(AGU)C 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)DtT(AGU)D 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)HtT(AGU)H 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)I1tT(AGU)I1 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)I2tT(AGU)I2 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)JtT(AGU)J 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)N1tT(AGU)N1 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)N2tT(AGU)N2 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)O1tT(AGU)O1 73 nt0.62□□□□□ -2.31
UPF3P48412 tT(AGU)O2tT(AGU)O2 73 nt0.62□□□□□ -2.31
UPF3P48412 snR52snR52 92 nt0.62□□□□□ -2.31
UPF3P48412 YJL182CYJL182C 318 nt0.61□□□□□ -2.31
UPF3P48412 TRS65YGR166W 1683 nt0.6□□□□□ -2.31
UPF3P48412 YHR131W-AYHR131W-A 246 nt0.6□□□□□ -2.31
UPF3P48412 snR46snR46 197 nt0.6□□□□□ -2.31
UPF3P48412 PRP39YML046W 1890 nt0.59□□□□□ -2.31
UPF3P48412 YLR342W-AYLR342W-A 174 nt0.59□□□□□ -2.31
UPF3P48412 NNF2YGR089W 2811 nt0.57□□□□□ -2.32
UPF3P48412 TAH1YCR060W 336 nt0.57□□□□□ -2.32
UPF3P48412 SNU13YEL026W 381 nt0.57□□□□□ -2.32
UPF3P48412 YEL073CYEL073C 324 nt0.57□□□□□ -2.32
UPF3P48412 YLR232WYLR232W 348 nt0.57□□□□□ -2.32
UPF3P48412 PAU12YGR294W 363 nt0.56□□□□□ -2.32
UPF3P48412 UTP20YBL004W 7482 nt0.56□□□□□ -2.32
UPF3P48412 YMR160WYMR160W 2451 nt0.54□□□□□ -2.32
UPF3P48412 SBH1YER087C-B 249 nt0.53□□□□□ -2.32
UPF3P48412 YGL182CYGL182C 324 nt0.53□□□□□ -2.32
UPF3P48412 YBL039C-AYBL039C-A 84 nt0.53□□□□□ -2.32
UPF3P48412 YJL150WYJL150W 303 nt0.52□□□□□ -2.33
UPF3P48412 YOR192C-BYOR192C-B 5313 nt0.51□□□□□ -2.33
UPF3P48412 tF(GAA)BtF(GAA)B 73 nt0.5□□□□□ -2.33
UPF3P48412 tF(GAA)FtF(GAA)F 73 nt0.5□□□□□ -2.33
UPF3P48412 tF(GAA)GtF(GAA)G 73 nt0.5□□□□□ -2.33
UPF3P48412 tF(GAA)H1tF(GAA)H1 73 nt0.5□□□□□ -2.33
UPF3P48412 tF(GAA)H2tF(GAA)H2 73 nt0.5□□□□□ -2.33
UPF3P48412 tF(GAA)MtF(GAA)M 73 nt0.5□□□□□ -2.33
UPF3P48412 tF(GAA)P1tF(GAA)P1 73 nt0.5□□□□□ -2.33
UPF3P48412 tF(GAA)P2tF(GAA)P2 73 nt0.5□□□□□ -2.33
UPF3P48412 YLL006W-AYLL006W-A 177 nt0.5□□□□□ -2.33
UPF3P48412 YOR381W-AYOR381W-A 168 nt0.5□□□□□ -2.33
UPF3P48412 MYO1YHR023W 5787 nt0.49□□□□□ -2.33
UPF3P48412 YDR544CYDR544C 429 nt0.49□□□□□ -2.33
UPF3P48412 YNL337WYNL337W 255 nt0.49□□□□□ -2.33
UPF3P48412 YKL145W-AYKL145W-A 93 nt0.48□□□□□ -2.33
UPF3P48412 YBR072C-AYBR072C-A 162 nt0.47□□□□□ -2.33
UPF3P48412 YLR466C-BYLR466C-B 117 nt0.45□□□□□ -2.34
UPF3P48412 ULP2YIL031W 3105 nt0.45□□□□□ -2.34
UPF3P48412 NIP1YMR309C 2439 nt0.44□□□□□ -2.34
UPF3P48412 YDR371C-AYDR371C-A 105 nt0.44□□□□□ -2.34
UPF3P48412 SDH6YDR379C-A 240 nt0.44□□□□□ -2.34
UPF3P48412 RPS26AYGL189C 360 nt0.44□□□□□ -2.34
UPF3P48412 YNL198CYNL198C 303 nt0.44□□□□□ -2.34
UPF3P48412 YOR170WYOR170W 306 nt0.44□□□□□ -2.34
UPF3P48412 MLP2YIL149C 5040 nt0.44□□□□□ -2.34
UPF3P48412 BIR1YJR089W 2865 nt0.43□□□□□ -2.34
UPF3P48412 COG6YNL041C 2520 nt0.43□□□□□ -2.34
UPF3P48412 GLG1YKR058W 1851 nt0.43□□□□□ -2.34
UPF3P48412 YOR314W-AYOR314W-A 111 nt0.42□□□□□ -2.34
UPF3P48412 BUL2YML111W 2763 nt0.41□□□□□ -2.34
UPF3P48412 IQG1YPL242C 4488 nt0.41□□□□□ -2.34
UPF3P48412 YGR151CYGR151C 336 nt0.4□□□□□ -2.35
UPF3P48412 snR48snR48 113 nt0.39□□□□□ -2.35
UPF3P48412 FMP27YLR454W 7887 nt0.39□□□□□ -2.35
UPF3P48412 ORC3YLL004W 1851 nt0.39□□□□□ -2.35
UPF3P48412 RPM2YML091C 3609 nt0.39□□□□□ -2.35
UPF3P48412 YHL015W-AYHL015W-A 84 nt0.38□□□□□ -2.35
UPF3P48412 YOR102WYOR102W 351 nt0.38□□□□□ -2.35
UPF3P48412 tM(CAU)Q2tM(CAU)Q2 78 nt0.37□□□□□ -2.35
UPF3P48412 YOR186C-AYOR186C-A 210 nt0.37□□□□□ -2.35
UPF3P48412 YOR329W-AYOR329W-A 210 nt0.37□□□□□ -2.35
UPF3P48412 CSE1YGL238W 2883 nt0.37□□□□□ -2.35
Retrieved 100 of 7,029 protein–RNA pairs in 11.9 ms