Protein–RNA interactions for Protein: P33202

UFD4, Ubiquitin fusion degradation protein 4, yeastyeast

Predictions only

Length 1,483 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UFD4P33202 VPS20YMR077C 666 nt-2.62□□□□□ -2.83
UFD4P33202 YDL011CYDL011C 324 nt-2.63□□□□□ -2.83
UFD4P33202 YLR456WYLR456W 615 nt-2.64□□□□□ -2.83
UFD4P33202 YPL229WYPL229W 621 nt-2.64□□□□□ -2.83
UFD4P33202 RDS3YPR094W 324 nt-2.65□□□□□ -2.83
UFD4P33202 YDR426CYDR426C 378 nt-2.66□□□□□ -2.84
UFD4P33202 YHR125WYHR125W 306 nt-2.66□□□□□ -2.84
UFD4P33202 CBS1YDL069C 690 nt-2.68□□□□□ -2.84
UFD4P33202 Q0142Q0142 177 nt-2.69□□□□□ -2.84
UFD4P33202 YGR270C-AYGR270C-A 219 nt-2.7□□□□□ -2.84
UFD4P33202 JLP2YMR132C 627 nt-2.71□□□□□ -2.84
UFD4P33202 CSE2YNR010W 450 nt-2.75□□□□□ -2.85
UFD4P33202 YLR217WYLR217W 324 nt-2.76□□□□□ -2.85
UFD4P33202 TSC3YBR058C-A 243 nt-2.76□□□□□ -2.85
UFD4P33202 CDC65tQ(CUG)M 72 nt-2.77□□□□□ -2.85
UFD4P33202 YFL012WYFL012W 447 nt-2.79□□□□□ -2.86
UFD4P33202 tQ(UUG)QtQ(UUG)Q 76 nt-2.8□□□□□ -2.86
UFD4P33202 YAF9YNL107W 681 nt-2.8□□□□□ -2.86
UFD4P33202 YMR193C-AYMR193C-A 387 nt-2.81□□□□□ -2.86
UFD4P33202 snR81snR81 201 nt-2.82□□□□□ -2.86
UFD4P33202 YOR121CYOR121C 306 nt-2.82□□□□□ -2.86
UFD4P33202 YBR285WYBR285W 435 nt-2.83□□□□□ -2.86
UFD4P33202 YER175W-AYER175W-A 165 nt-2.84□□□□□ -2.86
UFD4P33202 PCC1YKR095W-A 267 nt-2.85□□□□□ -2.87
UFD4P33202 EAF6YJR082C 342 nt-2.86□□□□□ -2.87
UFD4P33202 YBL071CYBL071C 309 nt-2.86□□□□□ -2.87
UFD4P33202 snR9snR9 187 nt-2.87□□□□□ -2.87
UFD4P33202 YER090C-AYER090C-A 90 nt-2.9□□□□□ -2.87
UFD4P33202 YGR240C-AYGR240C-A 201 nt-2.92□□□□□ -2.88
UFD4P33202 TOM22YNL131W 459 nt-2.92□□□□□ -2.88
UFD4P33202 YOR293C-AYOR293C-A 150 nt-2.94□□□□□ -2.88
UFD4P33202 YDL016CYDL016C 303 nt-2.95□□□□□ -2.88
UFD4P33202 YDR544CYDR544C 429 nt-2.95□□□□□ -2.88
UFD4P33202 BI2Q0110 1272 nt-2.96□□□□□ -2.88
UFD4P33202 YNL266WYNL266W 420 nt-2.96□□□□□ -2.88
UFD4P33202 YGR174W-AYGR174W-A 87 nt-2.97□□□□□ -2.89
UFD4P33202 YKL044WYKL044W 321 nt-2.97□□□□□ -2.89
UFD4P33202 GPI15YNL038W 690 nt-2.97□□□□□ -2.89
UFD4P33202 PRM3YPL192C 402 nt-2.97□□□□□ -2.89
UFD4P33202 snR39BsnR39B 96 nt-2.98□□□□□ -2.89
UFD4P33202 snR34snR34 203 nt-2.99□□□□□ -2.89
UFD4P33202 snR77snR77 88 nt-3□□□□□ -2.89
UFD4P33202 YGR069WYGR069W 336 nt-3.03□□□□□ -2.89
UFD4P33202 YIL029CYIL029C 429 nt-3.04□□□□□ -2.9
UFD4P33202 RPS27BYHR021C 249 nt-3.05□□□□□ -2.9
UFD4P33202 snR50snR50 90 nt-3.06□□□□□ -2.9
UFD4P33202 YMR315W-AYMR315W-A 108 nt-3.07□□□□□ -2.9
UFD4P33202 YNL205CYNL205C 423 nt-3.07□□□□□ -2.9
UFD4P33202 YML054C-AYML054C-A 159 nt-3.12□□□□□ -2.91
UFD4P33202 YOR314W-AYOR314W-A 111 nt-3.12□□□□□ -2.91
UFD4P33202 snR69snR69 101 nt-3.15□□□□□ -2.91
UFD4P33202 YML099W-AYML099W-A 330 nt-3.16□□□□□ -2.91
UFD4P33202 YLL019W-AYLL019W-A 93 nt-3.17□□□□□ -2.92
UFD4P33202 YJL197C-AYJL197C-A 282 nt-3.2□□□□□ -2.92
UFD4P33202 YAR047CYAR047C 321 nt-3.2□□□□□ -2.92
UFD4P33202 snR67snR67 82 nt-3.22□□□□□ -2.92
UFD4P33202 YLR202CYLR202C 327 nt-3.22□□□□□ -2.92
UFD4P33202 YIR021W-AYIR021W-A 213 nt-3.24□□□□□ -2.93
UFD4P33202 HMRA1YCR097W 381 nt-3.25□□□□□ -2.93
UFD4P33202 YGL149WYGL149W 306 nt-3.25□□□□□ -2.93
UFD4P33202 YKL063CYKL063C 504 nt-3.25□□□□□ -2.93
UFD4P33202 YDR048CYDR048C 315 nt-3.26□□□□□ -2.93
UFD4P33202 YLR269CYLR269C 351 nt-3.28□□□□□ -2.94
UFD4P33202 YDR102CYDR102C 333 nt-3.3□□□□□ -2.94
UFD4P33202 YOR309CYOR309C 381 nt-3.38□□□□□ -2.95
UFD4P33202 YIL115W-AYIL115W-A 372 nt-3.42□□□□□ -2.96
UFD4P33202 YOR008C-AYOR008C-A 225 nt-3.45□□□□□ -2.96
UFD4P33202 YER137W-AYER137W-A 306 nt-3.46□□□□□ -2.96
UFD4P33202 YOR072W-BYOR072W-B 162 nt-3.48□□□□□ -2.97
UFD4P33202 YMR172C-AYMR172C-A 384 nt-3.5□□□□□ -2.97
UFD4P33202 ATP19YOL077W-A 207 nt-3.52□□□□□ -2.97
UFD4P33202 CSN9YDR179C 489 nt-3.55□□□□□ -2.98
UFD4P33202 YER097WYER097W 330 nt-3.6□□□□□ -2.99
UFD4P33202 MPC1YGL080W 393 nt-3.65□□□□□ -2.99
UFD4P33202 YOL083C-AYOL083C-A 141 nt-3.67□□□□□ -3
UFD4P33202 YLR286W-AYLR286W-A 135 nt-3.68□□□□□ -3
UFD4P33202 YDL158CYDL158C 309 nt-3.69□□□□□ -3
UFD4P33202 tD(GUC)QtD(GUC)Q 75 nt-3.7□□□□□ -3
UFD4P33202 YDR524W-CYDR524W-C 90 nt-3.71□□□□□ -3
UFD4P33202 YGR146C-AYGR146C-A 162 nt-3.73□□□□□ -3.01
UFD4P33202 YLR412C-AYLR412C-A 207 nt-3.78□□□□□ -3.01
UFD4P33202 YBR182C-AYBR182C-A 195 nt-3.79□□□□□ -3.02
UFD4P33202 YFL032WYFL032W 321 nt-3.79□□□□□ -3.02
UFD4P33202 tM(CAU)Q2tM(CAU)Q2 78 nt-3.8□□□□□ -3.02
UFD4P33202 YJR162CYJR162C 351 nt-3.81□□□□□ -3.02
UFD4P33202 YNL337WYNL337W 255 nt-3.81□□□□□ -3.02
UFD4P33202 YDL159C-BYDL159C-B 177 nt-3.84□□□□□ -3.02
UFD4P33202 YLR342W-AYLR342W-A 174 nt-3.84□□□□□ -3.02
UFD4P33202 snR54snR54 86 nt-3.85□□□□□ -3.03
UFD4P33202 YOR376W-AYOR376W-A 156 nt-3.86□□□□□ -3.03
UFD4P33202 snR60snR60 104 nt-3.94□□□□□ -3.04
UFD4P33202 YFL019CYFL019C 354 nt-3.94□□□□□ -3.04
UFD4P33202 YBR178WYBR178W 375 nt-3.97□□□□□ -3.04
UFD4P33202 YBR196C-AYBR196C-A 150 nt-3.99□□□□□ -3.05
UFD4P33202 YER006C-AYER006C-A 318 nt-4.01□□□□□ -3.05
UFD4P33202 YLR406C-AYLR406C-A 150 nt-4.05□□□□□ -3.06
UFD4P33202 YOR381W-AYOR381W-A 168 nt-4.05□□□□□ -3.06
UFD4P33202 YNL028WYNL028W 318 nt-4.07□□□□□ -3.06
UFD4P33202 ATP6Q0085 780 nt-4.08□□□□□ -3.06
UFD4P33202 YNL324WYNL324W 396 nt-4.08□□□□□ -3.06
Retrieved 100 of 7,029 protein–RNA pairs in 13.9 ms