Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Sdc1P18828 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Sdc1P18828 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Sdc1P18828 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Sdc1P18828 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Clvs2-203ENSMUST00000160299 2610 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Sdc1P18828 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sdc1P18828 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sdc1P18828 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sdc1P18828 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Sdc1P18828 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Sdc1P18828 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Sdc1P18828 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC14.21□□□□□ -0.13
Sdc1P18828 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Sdc1P18828 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Sdc1P18828 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sdc1P18828 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Sdc1P18828 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sdc1P18828 AC125311.2-201ENSMUST00000227477 1940 ntBASIC14.21□□□□□ -0.14
Sdc1P18828 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Sdc1P18828 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sdc1P18828 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sdc1P18828 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sdc1P18828 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sdc1P18828 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Sdc1P18828 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Sdc1P18828 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Sdc1P18828 Ogfr-201ENSMUST00000029087 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Sdc1P18828 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Sdc1P18828 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC14.2□□□□□ -0.14
Sdc1P18828 Gm22238-201ENSMUST00000175222 88 ntBASIC14.2□□□□□ -0.14
Sdc1P18828 Gm27801-201ENSMUST00000184174 223 ntBASIC14.2□□□□□ -0.14
Sdc1P18828 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC14.2□□□□□ -0.14
Sdc1P18828 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Sdc1P18828 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Sdc1P18828 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Sdc1P18828 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC14.19□□□□□ -0.14
Sdc1P18828 Spcs1-204ENSMUST00000226782 949 ntBASIC14.19□□□□□ -0.14
Sdc1P18828 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Sdc1P18828 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 AC165080.2-201ENSMUST00000217491 1530 ntBASIC14.19□□□□□ -0.14
Sdc1P18828 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
Sdc1P18828 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC14.19□□□□□ -0.14
Sdc1P18828 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Sdc1P18828 Gm16499-203ENSMUST00000204633 2177 ntBASIC14.19□□□□□ -0.14
Sdc1P18828 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Ubr2-201ENSMUST00000113335 5691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Sdc1P18828 Sacs-204ENSMUST00000121091 4581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Sdc1P18828 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms