Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC16.19■□□□□ 0.18
FOXA2Q9Y261 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 BX119927.1-201ENST00000636596 1552 ntBASIC16.18■□□□□ 0.18
FOXA2Q9Y261 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 CYP2T1P-201ENST00000432607 1285 ntBASIC16.18■□□□□ 0.18
FOXA2Q9Y261 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 CASP6-205ENST00000505486 538 ntTSL 4 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 TMEM179-206ENST00000616017 1645 ntBASIC16.18■□□□□ 0.18
FOXA2Q9Y261 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 AC068338.2-201ENST00000563278 1430 ntBASIC16.18■□□□□ 0.18
FOXA2Q9Y261 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
FOXA2Q9Y261 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 AIRN-201ENST00000601203 4374 ntBASIC16.17■□□□□ 0.18
FOXA2Q9Y261 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 MIR663A-201ENST00000385250 93 ntBASIC16.17■□□□□ 0.18
FOXA2Q9Y261 AC006970.2-201ENST00000450065 779 ntBASIC16.17■□□□□ 0.18
FOXA2Q9Y261 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 RAP2CP1-201ENST00000605103 478 ntBASIC16.17■□□□□ 0.18
FOXA2Q9Y261 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA2Q9Y261 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 CD37-204ENST00000535669 1674 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 APTR-203ENST00000430801 583 ntTSL 5 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 PLLP-204ENST00000569059 665 ntTSL 3 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA2Q9Y261 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 13.8 ms