Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
TRIM56Q9BRZ2 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 AC137761.2-201ENST00000561729 223 ntBASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 AC145350.3-201ENST00000569033 163 ntBASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
TRIM56Q9BRZ2 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 CYP21A1P-202ENST00000354927 1481 ntBASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.37■□□□□ 0.85
TRIM56Q9BRZ2 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 FAM21FP-204ENST00000608637 956 ntBASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TRIM56Q9BRZ2 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 CNN2P6-201ENST00000439038 900 ntBASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 AL591742.1-201ENST00000604433 565 ntBASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
TRIM56Q9BRZ2 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TRIM56Q9BRZ2 AL356652.1-201ENST00000615962 565 ntBASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms