Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 AL691432.2-201ENST00000607222 2038 ntBASIC20.68■□□□□ 0.9
USP29Q9HBJ7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 BX119927.1-201ENST00000636596 1552 ntBASIC20.68■□□□□ 0.9
USP29Q9HBJ7 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USP29Q9HBJ7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 OR10C1-204ENST00000622521 1039 ntBASIC20.67■□□□□ 0.9
USP29Q9HBJ7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.67■□□□□ 0.9
USP29Q9HBJ7 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 MCRIP2P1-201ENST00000394346 511 ntBASIC20.66■□□□□ 0.9
USP29Q9HBJ7 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.66■□□□□ 0.9
USP29Q9HBJ7 AC125437.2-201ENST00000625180 2167 ntBASIC20.66■□□□□ 0.9
USP29Q9HBJ7 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
USP29Q9HBJ7 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 FAM201B-201ENST00000458407 597 ntBASIC20.65■□□□□ 0.9
USP29Q9HBJ7 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 AC008694.1-202ENST00000636953 945 ntBASIC20.65■□□□□ 0.9
USP29Q9HBJ7 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.65■□□□□ 0.9
USP29Q9HBJ7 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
USP29Q9HBJ7 PTBP1P-201ENST00000554374 1601 ntBASIC20.64■□□□□ 0.9
USP29Q9HBJ7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 CYP2T1P-201ENST00000432607 1285 ntBASIC20.64■□□□□ 0.89
USP29Q9HBJ7 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
USP29Q9HBJ7 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 AL512625.2-201ENST00000417533 625 ntBASIC20.63■□□□□ 0.89
USP29Q9HBJ7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
USP29Q9HBJ7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms