Protein–RNA interactions for Protein: Q8VC31

Ccdc9, Coiled-coil domain-containing protein 9, mousemouse

Known RBP Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc9Q8VC31 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Ccdc9Q8VC31 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc9Q8VC31 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc9Q8VC31 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC20.93■□□□□ 0.94
Ccdc9Q8VC31 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc9Q8VC31 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Ccdc9Q8VC31 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Syn1-202ENSMUST00000115345 3261 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Gpc1-201ENSMUST00000045970 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Ccdc9Q8VC31 Gm16011-201ENSMUST00000121567 2662 ntBASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Rab11fip5-202ENSMUST00000204087 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Ric8b-201ENSMUST00000038523 3069 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Ccdc9Q8VC31 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Zfp142-201ENSMUST00000027315 6480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Ccdc9Q8VC31 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
Ccdc9Q8VC31 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc9Q8VC31 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc9Q8VC31 AC133083.1-201ENSMUST00000221736 2209 ntBASIC20.89■□□□□ 0.94
Ccdc9Q8VC31 Htatsf1-201ENSMUST00000088652 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Ccdc9Q8VC31 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Espn-212ENSMUST00000105658 2815 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Tead3-206ENSMUST00000156862 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Ccdc9Q8VC31 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Eif4g3-205ENSMUST00000105831 6235 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Ccdc9Q8VC31 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms