Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
HDAC4P56524 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HDAC4P56524 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.98■□□□□ 0.95
HDAC4P56524 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
HDAC4P56524 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
HDAC4P56524 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC4P56524 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.97■□□□□ 0.95
HDAC4P56524 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC4P56524 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC4P56524 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC20.97■□□□□ 0.95
HDAC4P56524 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.97■□□□□ 0.95
HDAC4P56524 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.97■□□□□ 0.95
HDAC4P56524 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.97■□□□□ 0.95
HDAC4P56524 AL138781.1-201ENST00000566567 1274 ntBASIC20.97■□□□□ 0.95
HDAC4P56524 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.97■□□□□ 0.95
HDAC4P56524 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.97■□□□□ 0.95
HDAC4P56524 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
HDAC4P56524 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
HDAC4P56524 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.97■□□□□ 0.95
HDAC4P56524 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HDAC4P56524 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC4P56524 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.96■□□□□ 0.95
HDAC4P56524 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.96■□□□□ 0.95
HDAC4P56524 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
HDAC4P56524 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.96■□□□□ 0.95
HDAC4P56524 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC4P56524 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
HDAC4P56524 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC4P56524 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.96■□□□□ 0.95
HDAC4P56524 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
HDAC4P56524 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
HDAC4P56524 DUSP5P2-201ENST00000426873 1033 ntBASIC20.96■□□□□ 0.95
HDAC4P56524 HES2-205ENST00000487437 968 ntTSL 3 BASIC20.96■□□□□ 0.95
HDAC4P56524 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.96■□□□□ 0.95
HDAC4P56524 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.96■□□□□ 0.95
HDAC4P56524 AC098934.4-201ENST00000564127 592 ntBASIC20.96■□□□□ 0.95
HDAC4P56524 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.96■□□□□ 0.95
HDAC4P56524 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.96■□□□□ 0.95
HDAC4P56524 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.96■□□□□ 0.95
HDAC4P56524 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC4P56524 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HDAC4P56524 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HDAC4P56524 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
HDAC4P56524 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.95■□□□□ 0.94
HDAC4P56524 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.95■□□□□ 0.94
HDAC4P56524 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.95■□□□□ 0.94
HDAC4P56524 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.95■□□□□ 0.94
HDAC4P56524 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.95■□□□□ 0.94
HDAC4P56524 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.95■□□□□ 0.94
HDAC4P56524 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.95■□□□□ 0.94
HDAC4P56524 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.95■□□□□ 0.94
HDAC4P56524 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HDAC4P56524 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.94■□□□□ 0.94
HDAC4P56524 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
HDAC4P56524 HLA-L-209ENST00000420110 1011 ntBASIC20.94■□□□□ 0.94
HDAC4P56524 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
HDAC4P56524 AC091874.3-201ENST00000512672 1195 ntBASIC20.94■□□□□ 0.94
HDAC4P56524 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.94■□□□□ 0.94
HDAC4P56524 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.94■□□□□ 0.94
HDAC4P56524 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
HDAC4P56524 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
HDAC4P56524 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HDAC4P56524 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
HDAC4P56524 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HDAC4P56524 AC142086.2-201ENST00000569753 217 ntBASIC20.93■□□□□ 0.94
HDAC4P56524 MIR4758-201ENST00000577688 71 ntBASIC20.93■□□□□ 0.94
HDAC4P56524 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms