Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
CPSF4O95639 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.09■□□□□ 0.65
CPSF4O95639 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.09■□□□□ 0.65
CPSF4O95639 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.08■□□□□ 0.65
CPSF4O95639 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.65
CPSF4O95639 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4O95639 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4O95639 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4O95639 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4O95639 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4O95639 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4O95639 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.65
CPSF4O95639 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CPSF4O95639 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.08■□□□□ 0.64
CPSF4O95639 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CPSF4O95639 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
CPSF4O95639 TERF1P5-201ENST00000477545 1207 ntBASIC19.08■□□□□ 0.64
CPSF4O95639 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.08■□□□□ 0.64
CPSF4O95639 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
CPSF4O95639 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.08■□□□□ 0.64
CPSF4O95639 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
CPSF4O95639 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.08■□□□□ 0.64
CPSF4O95639 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.08■□□□□ 0.64
CPSF4O95639 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
CPSF4O95639 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
CPSF4O95639 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.64
CPSF4O95639 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.08■□□□□ 0.64
CPSF4O95639 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
CPSF4O95639 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
CPSF4O95639 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.07■□□□□ 0.64
CPSF4O95639 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.07■□□□□ 0.64
CPSF4O95639 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.07■□□□□ 0.64
CPSF4O95639 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.07■□□□□ 0.64
CPSF4O95639 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CPSF4O95639 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
CPSF4O95639 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
CPSF4O95639 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.07■□□□□ 0.64
CPSF4O95639 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
CPSF4O95639 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.07■□□□□ 0.64
CPSF4O95639 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.07■□□□□ 0.64
CPSF4O95639 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.07■□□□□ 0.64
CPSF4O95639 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
CPSF4O95639 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4O95639 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4O95639 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4O95639 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4O95639 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
CPSF4O95639 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4O95639 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.06■□□□□ 0.64
CPSF4O95639 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4O95639 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.06■□□□□ 0.64
CPSF4O95639 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.06■□□□□ 0.64
CPSF4O95639 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.06■□□□□ 0.64
CPSF4O95639 AC097381.1-201ENST00000429019 1296 ntBASIC19.06■□□□□ 0.64
CPSF4O95639 AC034268.1-201ENST00000441047 882 ntBASIC19.06■□□□□ 0.64
CPSF4O95639 AL356652.1-201ENST00000615962 565 ntBASIC19.06■□□□□ 0.64
CPSF4O95639 AC010536.3-201ENST00000620306 533 ntBASIC19.06■□□□□ 0.64
CPSF4O95639 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.06■□□□□ 0.64
CPSF4O95639 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4O95639 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4O95639 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
CPSF4O95639 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CPSF4O95639 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CPSF4O95639 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
CPSF4O95639 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.05■□□□□ 0.64
CPSF4O95639 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CPSF4O95639 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CPSF4O95639 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CPSF4O95639 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.05■□□□□ 0.64
CPSF4O95639 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.05■□□□□ 0.64
CPSF4O95639 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.05■□□□□ 0.64
CPSF4O95639 AL591742.1-201ENST00000604433 565 ntBASIC19.05■□□□□ 0.64
CPSF4O95639 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.05■□□□□ 0.64
CPSF4O95639 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CPSF4O95639 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CPSF4O95639 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC19.05■□□□□ 0.64
CPSF4O95639 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
CPSF4O95639 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms