Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 IGHVIII-51-1-201ENST00000519403 302 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 GLYATL1P3-201ENST00000527482 909 ntAPPRIS P1 TSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 AP003555.2-201ENST00000528507 655 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 AC109635.2-202ENST00000529219 500 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 NPM1P50-201ENST00000532878 867 ntBASIC8.27□□□□□ -1.09
MSX1P28360 MYL6-207ENST00000547649 655 ntAPPRIS ALT1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 AC005632.1-201ENST00000550637 576 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 AL137779.1-201ENST00000556205 599 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 LINC02284-201ENST00000558120 573 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 AC010650.1-201ENST00000567559 494 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 MIR3663-201ENST00000583207 97 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC103810.2-203ENST00000584959 631 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 AC091132.5-204ENST00000586348 630 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 AC022146.1-201ENST00000595307 847 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC005034.5-201ENST00000604219 466 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 BX649601.1-201ENST00000608264 572 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC026368.1-201ENST00000614934 690 ntBASIC8.27□□□□□ -1.09
MSX1P28360 BX005195.1-201ENST00000618097 1198 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC126177.8-201ENST00000618339 1015 ntBASIC8.27□□□□□ -1.09
MSX1P28360 AC008957.2-201ENST00000618632 396 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 MIR3160-2-201ENST00000637870 81 ntBASIC8.27□□□□□ -1.09
MSX1P28360 C7orf71-201ENST00000409974 1956 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 LDHA-218ENST00000540430 2305 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 ZNF185-204ENST00000370268 4305 ntAPPRIS P3 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 NXPE1-201ENST00000251921 1888 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 AL354984.1-201ENST00000371169 1854 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 PRAMEF10-201ENST00000235347 1525 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 FGF5-201ENST00000312465 4555 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 PRAMEF33-201ENST00000437300 1518 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 C11orf44-201ENST00000317019 3547 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 ZNF322-202ENST00000456172 4718 ntAPPRIS P1 TSL 3 BASIC8.27□□□□□ -1.09
MSX1P28360 ZNF322-207ENST00000607204 4737 ntAPPRIS P1 TSL 4 BASIC8.27□□□□□ -1.09
MSX1P28360 ELP2-205ENST00000442325 2722 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 GLE1-201ENST00000309971 3321 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 USP4-202ENST00000351842 3222 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 LINC01748-202ENST00000634281 2864 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 ZMYND8-207ENST00000396281 5511 ntAPPRIS ALT2 TSL 2 BASIC8.27□□□□□ -1.09
MSX1P28360 ACLY-207ENST00000590151 4309 ntAPPRIS P4 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 GLDN-202ENST00000396399 4584 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 KIAA0040-201ENST00000423313 4564 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 RSU1-205ENST00000602389 3639 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
MSX1P28360 USP17L8-201ENST00000527080 1593 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
MSX1P28360 MLLT3-209ENST00000629733 3264 ntTSL 5 BASIC8.27□□□□□ -1.09
MSX1P28360 LINC00858-201ENST00000415469 2685 ntTSL 2 BASIC8.26□□□□□ -1.09
MSX1P28360 TTC23-214ENST00000558663 2068 ntAPPRIS P2 TSL 2 BASIC8.26□□□□□ -1.09
MSX1P28360 ZRANB2-202ENST00000370920 3078 ntAPPRIS P4 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 FRMPD2-201ENST00000305531 4665 ntAPPRIS ALT2 TSL 5 BASIC8.26□□□□□ -1.09
MSX1P28360 OR7E122P-202ENST00000641144 6171 ntBASIC8.26□□□□□ -1.09
MSX1P28360 PAX6-273ENST00000640610 2730 ntAPPRIS ALT1 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 IL16-201ENST00000302987 3999 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 ZNF525-203ENST00000475179 1868 ntTSL 2 BASIC8.26□□□□□ -1.09
MSX1P28360 ACVR2A-207ENST00000535787 5166 ntTSL 2 BASIC8.26□□□□□ -1.09
MSX1P28360 PRLR-212ENST00000513753 1525 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 NF1P7-201ENST00000612076 1530 ntBASIC8.26□□□□□ -1.09
MSX1P28360 SUN5-201ENST00000356173 1254 ntAPPRIS P2 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 OR51D1-201ENST00000357605 1124 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
MSX1P28360 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 Y_RNA.813-201ENST00000364639 102 ntBASIC8.26□□□□□ -1.09
MSX1P28360 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
MSX1P28360 AC009967.1-201ENST00000379462 793 ntBASIC8.26□□□□□ -1.09
MSX1P28360 TRBV10-1-201ENST00000390364 412 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
MSX1P28360 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
MSX1P28360 EIF4A1P8-201ENST00000394444 1190 ntBASIC8.26□□□□□ -1.09
MSX1P28360 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 AC010745.4-201ENST00000420130 740 ntTSL 5 BASIC8.26□□□□□ -1.09
MSX1P28360 KIF9-203ENST00000425452 640 ntTSL 3 BASIC8.26□□□□□ -1.09
MSX1P28360 AC009501.2-201ENST00000428700 312 ntBASIC8.26□□□□□ -1.09
MSX1P28360 YWHAZP7-201ENST00000436906 631 ntBASIC8.26□□□□□ -1.09
MSX1P28360 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC8.26□□□□□ -1.09
MSX1P28360 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC8.26□□□□□ -1.09
MSX1P28360 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC8.26□□□□□ -1.09
MSX1P28360 SNRPEP8-201ENST00000442866 260 ntBASIC8.26□□□□□ -1.09
MSX1P28360 AL606804.1-202ENST00000446347 481 ntTSL 2 BASIC8.26□□□□□ -1.09
MSX1P28360 RNU6-956P-201ENST00000458868 103 ntBASIC8.26□□□□□ -1.09
MSX1P28360 RPS20P23-201ENST00000461683 354 ntBASIC8.26□□□□□ -1.09
MSX1P28360 RPL10AP3-201ENST00000462503 651 ntBASIC8.26□□□□□ -1.09
MSX1P28360 RPL30P6-201ENST00000475925 342 ntBASIC8.26□□□□□ -1.09
MSX1P28360 AP001318.1-201ENST00000476981 321 ntBASIC8.26□□□□□ -1.09
MSX1P28360 DPH5-211ENST00000488176 1034 ntAPPRIS P4 TSL 3 BASIC8.26□□□□□ -1.09
MSX1P28360 TDGF1P3-201ENST00000493351 567 ntBASIC8.26□□□□□ -1.09
MSX1P28360 DSTNP2-201ENST00000504533 515 ntBASIC8.26□□□□□ -1.09
MSX1P28360 OR7E28P-201ENST00000505191 975 ntBASIC8.26□□□□□ -1.09
MSX1P28360 PRDX4P1-201ENST00000507189 574 ntBASIC8.26□□□□□ -1.09
MSX1P28360 AC079140.3-201ENST00000511111 550 ntBASIC8.26□□□□□ -1.09
MSX1P28360 DUXAP2-201ENST00000519198 589 ntBASIC8.26□□□□□ -1.09
MSX1P28360 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC8.26□□□□□ -1.09
MSX1P28360 HIGD1AP10-201ENST00000527837 282 ntBASIC8.26□□□□□ -1.09
MSX1P28360 AC022239.1-201ENST00000527922 435 ntTSL 5 BASIC8.26□□□□□ -1.09
MSX1P28360 AC118273.2-201ENST00000532092 465 ntBASIC8.26□□□□□ -1.09
MSX1P28360 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC8.26□□□□□ -1.09
MSX1P28360 AC015914.1-201ENST00000558050 1072 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
MSX1P28360 AC024270.1-201ENST00000559181 404 ntBASIC8.26□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 244.9 ms