Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.68■□□□□ 0.9
TTC28Q96AY4 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 AC083849.1-201ENST00000615227 514 ntBASIC20.68■□□□□ 0.9
TTC28Q96AY4 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TTC28Q96AY4 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.68■□□□□ 0.9
TTC28Q96AY4 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.67■□□□□ 0.9
TTC28Q96AY4 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.67■□□□□ 0.9
TTC28Q96AY4 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
TTC28Q96AY4 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.67■□□□□ 0.9
TTC28Q96AY4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TTC28Q96AY4 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
TTC28Q96AY4 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TTC28Q96AY4 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TTC28Q96AY4 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TTC28Q96AY4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.67■□□□□ 0.9
TTC28Q96AY4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.67■□□□□ 0.9
TTC28Q96AY4 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.67■□□□□ 0.9
TTC28Q96AY4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.66■□□□□ 0.9
TTC28Q96AY4 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TTC28Q96AY4 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.66■□□□□ 0.9
TTC28Q96AY4 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TTC28Q96AY4 AL160237.2-201ENST00000556165 472 ntBASIC20.66■□□□□ 0.9
TTC28Q96AY4 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.66■□□□□ 0.9
TTC28Q96AY4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.66■□□□□ 0.9
TTC28Q96AY4 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TTC28Q96AY4 AC106795.1-205ENST00000512851 1056 ntBASIC20.66■□□□□ 0.9
TTC28Q96AY4 AP002469.2-201ENST00000531724 424 ntBASIC20.66■□□□□ 0.9
TTC28Q96AY4 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
TTC28Q96AY4 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TTC28Q96AY4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
TTC28Q96AY4 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TTC28Q96AY4 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TTC28Q96AY4 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TTC28Q96AY4 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TTC28Q96AY4 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.65■□□□□ 0.9
TTC28Q96AY4 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TTC28Q96AY4 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.65■□□□□ 0.9
TTC28Q96AY4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.65■□□□□ 0.9
TTC28Q96AY4 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.65■□□□□ 0.9
TTC28Q96AY4 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.65■□□□□ 0.9
TTC28Q96AY4 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TTC28Q96AY4 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TTC28Q96AY4 SLC25A6P4-201ENST00000586535 553 ntBASIC20.65■□□□□ 0.9
TTC28Q96AY4 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC20.65■□□□□ 0.9
TTC28Q96AY4 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.65■□□□□ 0.9
TTC28Q96AY4 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.64■□□□□ 0.9
TTC28Q96AY4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.64■□□□□ 0.9
TTC28Q96AY4 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
TTC28Q96AY4 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TTC28Q96AY4 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TTC28Q96AY4 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.64■□□□□ 0.9
TTC28Q96AY4 EMBP1-201ENST00000458200 901 ntBASIC20.64■□□□□ 0.9
TTC28Q96AY4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TTC28Q96AY4 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TTC28Q96AY4 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TTC28Q96AY4 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TTC28Q96AY4 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.89
TTC28Q96AY4 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TTC28Q96AY4 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TTC28Q96AY4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TTC28Q96AY4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
TTC28Q96AY4 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.64■□□□□ 0.89
TTC28Q96AY4 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20.64■□□□□ 0.89
TTC28Q96AY4 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
TTC28Q96AY4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.64■□□□□ 0.89
TTC28Q96AY4 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.64■□□□□ 0.89
TTC28Q96AY4 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TTC28Q96AY4 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TTC28Q96AY4 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
TTC28Q96AY4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TTC28Q96AY4 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TTC28Q96AY4 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TTC28Q96AY4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC20.63■□□□□ 0.89
TTC28Q96AY4 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TTC28Q96AY4 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.63■□□□□ 0.89
TTC28Q96AY4 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.63■□□□□ 0.89
TTC28Q96AY4 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC20.63■□□□□ 0.89
TTC28Q96AY4 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TTC28Q96AY4 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TTC28Q96AY4 AL031432.5-201ENST00000641059 760 ntBASIC20.63■□□□□ 0.89
TTC28Q96AY4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TTC28Q96AY4 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TTC28Q96AY4 AC092338.2-201ENST00000568827 1415 ntBASIC20.62■□□□□ 0.89
TTC28Q96AY4 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TTC28Q96AY4 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.62■□□□□ 0.89
TTC28Q96AY4 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.62■□□□□ 0.89
TTC28Q96AY4 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TTC28Q96AY4 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TTC28Q96AY4 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TTC28Q96AY4 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TTC28Q96AY4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.62■□□□□ 0.89
TTC28Q96AY4 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC20.62■□□□□ 0.89
TTC28Q96AY4 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TTC28Q96AY4 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.61■□□□□ 0.89
TTC28Q96AY4 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TTC28Q96AY4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TTC28Q96AY4 PRSS44-201ENST00000515154 1146 ntBASIC20.61■□□□□ 0.89
TTC28Q96AY4 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TTC28Q96AY4 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.61■□□□□ 0.89
TTC28Q96AY4 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms