Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 BET1L-204ENST00000410108 637 ntTSL 3 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 AC069236.1-201ENST00000604339 616 ntBASIC21.7■■□□□ 1.06
SIX2Q9NPC8 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SIX2Q9NPC8 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 OR10C1-204ENST00000622521 1039 ntBASIC21.69■■□□□ 1.06
SIX2Q9NPC8 AC073111.5-205ENST00000641717 521 ntBASIC21.69■■□□□ 1.06
SIX2Q9NPC8 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC21.69■■□□□ 1.06
SIX2Q9NPC8 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 MIR935-201ENST00000401179 91 ntBASIC21.68■■□□□ 1.06
SIX2Q9NPC8 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 CDCA4P2-201ENST00000441182 718 ntBASIC21.68■■□□□ 1.06
SIX2Q9NPC8 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 AC005181.1-201ENST00000604782 1256 ntBASIC21.68■■□□□ 1.06
SIX2Q9NPC8 AC080038.1-201ENST00000611274 1154 ntBASIC21.68■■□□□ 1.06
SIX2Q9NPC8 AL050303.2-201ENST00000619798 666 ntBASIC21.68■■□□□ 1.06
SIX2Q9NPC8 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SIX2Q9NPC8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 METTL26-203ENST00000397664 604 ntTSL 2 BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.67■■□□□ 1.06
SIX2Q9NPC8 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 KRT17P1-201ENST00000399211 1546 ntBASIC21.66■■□□□ 1.06
SIX2Q9NPC8 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 PKD1P6-201ENST00000343738 4769 ntBASIC21.66■■□□□ 1.06
SIX2Q9NPC8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 RAP2CP1-201ENST00000605103 478 ntBASIC21.66■■□□□ 1.06
SIX2Q9NPC8 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC21.66■■□□□ 1.06
SIX2Q9NPC8 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SIX2Q9NPC8 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms