Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
RNF4P78317 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
RNF4P78317 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
RNF4P78317 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF4P78317 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF4P78317 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.67■□□□□ 0.58
RNF4P78317 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF4P78317 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.67■□□□□ 0.58
RNF4P78317 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
RNF4P78317 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 RNF165-205ENST00000588679 2904 ntBASIC18.67■□□□□ 0.58
RNF4P78317 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.67■□□□□ 0.58
RNF4P78317 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF4P78317 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
RNF4P78317 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
RNF4P78317 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.67■□□□□ 0.58
RNF4P78317 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.67■□□□□ 0.58
RNF4P78317 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF4P78317 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.66■□□□□ 0.58
RNF4P78317 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RNF4P78317 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
RNF4P78317 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.66■□□□□ 0.58
RNF4P78317 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RNF4P78317 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 ABHD17AP1-201ENST00000358206 933 ntBASIC18.66■□□□□ 0.58
RNF4P78317 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 ESRRAP1-201ENST00000400596 1257 ntBASIC18.66■□□□□ 0.58
RNF4P78317 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.66■□□□□ 0.58
RNF4P78317 FAM201B-201ENST00000458407 597 ntBASIC18.66■□□□□ 0.58
RNF4P78317 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.66■□□□□ 0.58
RNF4P78317 AC005829.2-201ENST00000571422 1056 ntBASIC18.66■□□□□ 0.58
RNF4P78317 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.66■□□□□ 0.58
RNF4P78317 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.66■□□□□ 0.58
RNF4P78317 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
RNF4P78317 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
RNF4P78317 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.66■□□□□ 0.58
RNF4P78317 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.65■□□□□ 0.58
RNF4P78317 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.65■□□□□ 0.58
RNF4P78317 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
RNF4P78317 AL390719.1-204ENST00000412397 1219 ntBASIC18.65■□□□□ 0.58
RNF4P78317 POU5F1P3-201ENST00000428824 1078 ntBASIC18.65■□□□□ 0.58
RNF4P78317 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.65■□□□□ 0.58
RNF4P78317 AC023632.3-201ENST00000521633 145 ntBASIC18.65■□□□□ 0.58
RNF4P78317 AP003097.1-201ENST00000530657 1135 ntBASIC18.65■□□□□ 0.58
RNF4P78317 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.65■□□□□ 0.58
RNF4P78317 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.65■□□□□ 0.58
RNF4P78317 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
RNF4P78317 DPP3P2-201ENST00000416030 1696 ntBASIC18.64■□□□□ 0.57
RNF4P78317 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RNF4P78317 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF4P78317 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.64■□□□□ 0.57
RNF4P78317 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
RNF4P78317 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
RNF4P78317 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC18.64■□□□□ 0.57
RNF4P78317 AC026366.1-201ENST00000488803 879 ntBASIC18.64■□□□□ 0.57
RNF4P78317 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.64■□□□□ 0.57
RNF4P78317 UNC93B4-201ENST00000505679 747 ntBASIC18.64■□□□□ 0.57
RNF4P78317 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RNF4P78317 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF4P78317 SOX15-203ENST00000570788 1093 ntBASIC18.64■□□□□ 0.57
RNF4P78317 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.64■□□□□ 0.57
RNF4P78317 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.64■□□□□ 0.57
RNF4P78317 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RNF4P78317 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
RNF4P78317 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
RNF4P78317 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.64■□□□□ 0.57
RNF4P78317 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RNF4P78317 PTBP1P-201ENST00000554374 1601 ntBASIC18.63■□□□□ 0.57
RNF4P78317 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC18.63■□□□□ 0.57
RNF4P78317 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNF4P78317 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 145 ms