Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN9P43378 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
PTPN9P43378 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
PTPN9P43378 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
PTPN9P43378 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
PTPN9P43378 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTPN9P43378 MIR4758-201ENST00000577688 71 ntBASIC21■□□□□ 0.95
PTPN9P43378 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21■□□□□ 0.95
PTPN9P43378 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21■□□□□ 0.95
PTPN9P43378 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN9P43378 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN9P43378 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN9P43378 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
PTPN9P43378 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN9P43378 AC073130.3-201ENST00000624389 2278 ntBASIC20.99■□□□□ 0.95
PTPN9P43378 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN9P43378 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
PTPN9P43378 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
PTPN9P43378 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN9P43378 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN9P43378 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC20.99■□□□□ 0.95
PTPN9P43378 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN9P43378 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN9P43378 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.99■□□□□ 0.95
PTPN9P43378 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PTPN9P43378 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
PTPN9P43378 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.99■□□□□ 0.95
PTPN9P43378 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.99■□□□□ 0.95
PTPN9P43378 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PTPN9P43378 AC104771.1-201ENST00000603335 964 ntBASIC20.99■□□□□ 0.95
PTPN9P43378 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.99■□□□□ 0.95
PTPN9P43378 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
PTPN9P43378 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN9P43378 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN9P43378 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN9P43378 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.98■□□□□ 0.95
PTPN9P43378 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.98■□□□□ 0.95
PTPN9P43378 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PTPN9P43378 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.98■□□□□ 0.95
PTPN9P43378 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
PTPN9P43378 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.98■□□□□ 0.95
PTPN9P43378 DUSP5P2-201ENST00000426873 1033 ntBASIC20.98■□□□□ 0.95
PTPN9P43378 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.98■□□□□ 0.95
PTPN9P43378 AC091874.3-201ENST00000512672 1195 ntBASIC20.98■□□□□ 0.95
PTPN9P43378 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.98■□□□□ 0.95
PTPN9P43378 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.98■□□□□ 0.95
PTPN9P43378 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.98■□□□□ 0.95
PTPN9P43378 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
PTPN9P43378 BX119927.1-201ENST00000636596 1552 ntBASIC20.97■□□□□ 0.95
PTPN9P43378 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.97■□□□□ 0.95
PTPN9P43378 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.97■□□□□ 0.95
PTPN9P43378 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.97■□□□□ 0.95
PTPN9P43378 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC20.97■□□□□ 0.95
PTPN9P43378 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 AC023632.3-201ENST00000521633 145 ntBASIC20.97■□□□□ 0.95
PTPN9P43378 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
PTPN9P43378 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.97■□□□□ 0.95
PTPN9P43378 AL031963.3-201ENST00000606441 850 ntBASIC20.97■□□□□ 0.95
PTPN9P43378 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
PTPN9P43378 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
PTPN9P43378 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
PTPN9P43378 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.97■□□□□ 0.95
PTPN9P43378 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
PTPN9P43378 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
PTPN9P43378 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.96■□□□□ 0.95
PTPN9P43378 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 KRT8P17-201ENST00000453110 1448 ntBASIC20.96■□□□□ 0.95
PTPN9P43378 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.96■□□□□ 0.95
PTPN9P43378 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.96■□□□□ 0.95
PTPN9P43378 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.96■□□□□ 0.95
PTPN9P43378 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
PTPN9P43378 AC073210.2-201ENST00000430369 194 ntBASIC20.96■□□□□ 0.95
PTPN9P43378 AL138781.1-201ENST00000566567 1274 ntBASIC20.96■□□□□ 0.95
PTPN9P43378 AC142086.2-201ENST00000569753 217 ntBASIC20.96■□□□□ 0.95
PTPN9P43378 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms