Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC15.34■□□□□ 0.05
HLA-DMBP28068 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DMBP28068 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
HLA-DMBP28068 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DMBP28068 AC092437.1-201ENST00000624794 1048 ntBASIC15.34■□□□□ 0.05
HLA-DMBP28068 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC15.34■□□□□ 0.05
HLA-DMBP28068 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DMBP28068 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DMBP28068 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DMBP28068 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.34■□□□□ 0.05
HLA-DMBP28068 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DMBP28068 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DMBP28068 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DMBP28068 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
HLA-DMBP28068 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC15.34■□□□□ 0.05
HLA-DMBP28068 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
HLA-DMBP28068 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
HLA-DMBP28068 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC15.33■□□□□ 0.05
HLA-DMBP28068 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.05
HLA-DMBP28068 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
HLA-DMBP28068 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC15.33■□□□□ 0.05
HLA-DMBP28068 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DMBP28068 DPP3P2-201ENST00000416030 1696 ntBASIC15.33■□□□□ 0.04
HLA-DMBP28068 AC016769.1-201ENST00000409132 1010 ntBASIC15.33■□□□□ 0.04
HLA-DMBP28068 AC007322.3-201ENST00000426526 701 ntBASIC15.33■□□□□ 0.04
HLA-DMBP28068 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 AC137761.2-201ENST00000561729 223 ntBASIC15.33■□□□□ 0.04
HLA-DMBP28068 AC145350.3-201ENST00000569033 163 ntBASIC15.33■□□□□ 0.04
HLA-DMBP28068 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DMBP28068 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DMBP28068 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DMBP28068 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DMBP28068 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DMBP28068 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC15.33■□□□□ 0.04
HLA-DMBP28068 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
HLA-DMBP28068 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 UBE2DNL-204ENST00000602536 740 ntBASIC15.32■□□□□ 0.04
HLA-DMBP28068 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC15.32■□□□□ 0.04
HLA-DMBP28068 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
HLA-DMBP28068 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC15.31■□□□□ 0.04
HLA-DMBP28068 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 KRT19P1-201ENST00000405746 1186 ntBASIC15.31■□□□□ 0.04
HLA-DMBP28068 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DMBP28068 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DMBP28068 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC15.31■□□□□ 0.04
HLA-DMBP28068 KRT8P36-201ENST00000489121 1440 ntBASIC15.31■□□□□ 0.04
HLA-DMBP28068 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
HLA-DMBP28068 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DMBP28068 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC15.31■□□□□ 0.04
HLA-DMBP28068 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC15.31■□□□□ 0.04
HLA-DMBP28068 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
HLA-DMBP28068 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
HLA-DMBP28068 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
HLA-DMBP28068 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms