Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.76■□□□□ 0.43
SOX2P48431 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.76■□□□□ 0.43
SOX2P48431 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SOX2P48431 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.76■□□□□ 0.43
SOX2P48431 KRT87P-202ENST00000534226 1464 ntBASIC17.75■□□□□ 0.43
SOX2P48431 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.75■□□□□ 0.43
SOX2P48431 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
SOX2P48431 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
SOX2P48431 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SOX2P48431 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.75■□□□□ 0.43
SOX2P48431 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
SOX2P48431 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 MTURN-203ENST00000409688 843 ntTSL 2 BASIC17.75■□□□□ 0.43
SOX2P48431 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.75■□□□□ 0.43
SOX2P48431 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 AL354811.1-201ENST00000610286 706 ntBASIC17.75■□□□□ 0.43
SOX2P48431 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 MIR6084-201ENST00000622012 110 ntBASIC17.75■□□□□ 0.43
SOX2P48431 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
SOX2P48431 LBX2-AS1-202ENST00000603175 2083 ntBASIC17.75■□□□□ 0.43
SOX2P48431 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.75■□□□□ 0.43
SOX2P48431 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
SOX2P48431 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
SOX2P48431 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SOX2P48431 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.74■□□□□ 0.43
SOX2P48431 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
SOX2P48431 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.74■□□□□ 0.43
SOX2P48431 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC17.74■□□□□ 0.43
SOX2P48431 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
SOX2P48431 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
SOX2P48431 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
SOX2P48431 AC125437.2-201ENST00000625180 2167 ntBASIC17.74■□□□□ 0.43
SOX2P48431 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
SOX2P48431 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC17.74■□□□□ 0.43
SOX2P48431 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
SOX2P48431 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
SOX2P48431 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 KRT16P2-201ENST00000414673 1423 ntBASIC17.73■□□□□ 0.43
SOX2P48431 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
SOX2P48431 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX2P48431 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
SOX2P48431 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX2P48431 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX2P48431 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SOX2P48431 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC17.73■□□□□ 0.43
SOX2P48431 AC120498.10-201ENST00000621827 505 ntBASIC17.73■□□□□ 0.43
SOX2P48431 AL136967.2-201ENST00000623968 743 ntBASIC17.73■□□□□ 0.43
SOX2P48431 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
SOX2P48431 AC116050.2-201ENST00000612102 1779 ntBASIC17.73■□□□□ 0.43
SOX2P48431 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC17.73■□□□□ 0.43
SOX2P48431 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
SOX2P48431 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
SOX2P48431 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
SOX2P48431 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.72■□□□□ 0.43
SOX2P48431 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC17.72■□□□□ 0.43
SOX2P48431 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms