Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.95■□□□□ 0.62
RFX3P48380 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 AC231657.2-201ENST00000624556 255 ntBASIC18.95■□□□□ 0.62
RFX3P48380 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
RFX3P48380 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
RFX3P48380 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
RFX3P48380 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.94■□□□□ 0.62
RFX3P48380 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.94■□□□□ 0.62
RFX3P48380 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RFX3P48380 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.94■□□□□ 0.62
RFX3P48380 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.94■□□□□ 0.62
RFX3P48380 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
RFX3P48380 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
RFX3P48380 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RFX3P48380 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.94■□□□□ 0.62
RFX3P48380 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.94■□□□□ 0.62
RFX3P48380 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.94■□□□□ 0.62
RFX3P48380 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.94■□□□□ 0.62
RFX3P48380 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.94■□□□□ 0.62
RFX3P48380 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.94■□□□□ 0.62
RFX3P48380 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
RFX3P48380 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.94■□□□□ 0.62
RFX3P48380 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.94■□□□□ 0.62
RFX3P48380 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RFX3P48380 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.94■□□□□ 0.62
RFX3P48380 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RFX3P48380 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
RFX3P48380 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RFX3P48380 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.93■□□□□ 0.62
RFX3P48380 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX3P48380 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC18.93■□□□□ 0.62
RFX3P48380 AC068338.2-201ENST00000563278 1430 ntBASIC18.93■□□□□ 0.62
RFX3P48380 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RFX3P48380 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
RFX3P48380 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX3P48380 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
RFX3P48380 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX3P48380 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RFX3P48380 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
RFX3P48380 CYP2T1P-201ENST00000432607 1285 ntBASIC18.93■□□□□ 0.62
RFX3P48380 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.93■□□□□ 0.62
RFX3P48380 AC007322.4-201ENST00000509611 723 ntBASIC18.93■□□□□ 0.62
RFX3P48380 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.93■□□□□ 0.62
RFX3P48380 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC18.93■□□□□ 0.62
RFX3P48380 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX3P48380 AC073111.5-205ENST00000641717 521 ntBASIC18.93■□□□□ 0.62
RFX3P48380 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX3P48380 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.93■□□□□ 0.62
RFX3P48380 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.93■□□□□ 0.62
RFX3P48380 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
RFX3P48380 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX3P48380 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.93■□□□□ 0.62
RFX3P48380 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
RFX3P48380 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.93■□□□□ 0.62
RFX3P48380 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX3P48380 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.92■□□□□ 0.62
RFX3P48380 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
RFX3P48380 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.92■□□□□ 0.62
RFX3P48380 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.92■□□□□ 0.62
RFX3P48380 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
RFX3P48380 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.92■□□□□ 0.62
RFX3P48380 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.92■□□□□ 0.62
RFX3P48380 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.92■□□□□ 0.62
RFX3P48380 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.92■□□□□ 0.62
RFX3P48380 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
RFX3P48380 AC008694.1-202ENST00000636953 945 ntBASIC18.92■□□□□ 0.62
RFX3P48380 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.92■□□□□ 0.62
RFX3P48380 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
RFX3P48380 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
RFX3P48380 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX3P48380 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 PCDHAC2-203ENST00000615316 3011 ntBASIC18.91■□□□□ 0.62
RFX3P48380 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
RFX3P48380 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
RFX3P48380 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX3P48380 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.91■□□□□ 0.62
RFX3P48380 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms