Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A2P12110 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A2P12110 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.96■□□□□ 0.79
COL6A2P12110 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL6A2P12110 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.95■□□□□ 0.79
COL6A2P12110 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.95■□□□□ 0.78
COL6A2P12110 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A2P12110 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL6A2P12110 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A2P12110 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A2P12110 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
COL6A2P12110 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
COL6A2P12110 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.95■□□□□ 0.78
COL6A2P12110 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.95■□□□□ 0.78
COL6A2P12110 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 AC125437.2-201ENST00000625180 2167 ntBASIC19.95■□□□□ 0.78
COL6A2P12110 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.95■□□□□ 0.78
COL6A2P12110 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
COL6A2P12110 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.95■□□□□ 0.78
COL6A2P12110 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL6A2P12110 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.94■□□□□ 0.78
COL6A2P12110 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.94■□□□□ 0.78
COL6A2P12110 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.94■□□□□ 0.78
COL6A2P12110 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL6A2P12110 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
COL6A2P12110 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.94■□□□□ 0.78
COL6A2P12110 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.94■□□□□ 0.78
COL6A2P12110 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.94■□□□□ 0.78
COL6A2P12110 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.94■□□□□ 0.78
COL6A2P12110 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL6A2P12110 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.94■□□□□ 0.78
COL6A2P12110 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.94■□□□□ 0.78
COL6A2P12110 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.93■□□□□ 0.78
COL6A2P12110 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.93■□□□□ 0.78
COL6A2P12110 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.93■□□□□ 0.78
COL6A2P12110 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
COL6A2P12110 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
COL6A2P12110 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
COL6A2P12110 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
COL6A2P12110 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.93■□□□□ 0.78
COL6A2P12110 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
COL6A2P12110 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.93■□□□□ 0.78
COL6A2P12110 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.93■□□□□ 0.78
COL6A2P12110 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.93■□□□□ 0.78
COL6A2P12110 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.93■□□□□ 0.78
COL6A2P12110 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.93■□□□□ 0.78
COL6A2P12110 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 AL691432.2-201ENST00000607222 2038 ntBASIC19.93■□□□□ 0.78
COL6A2P12110 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.93■□□□□ 0.78
COL6A2P12110 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL6A2P12110 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.93■□□□□ 0.78
COL6A2P12110 AC087633.2-202ENST00000565166 1439 ntBASIC19.93■□□□□ 0.78
COL6A2P12110 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
COL6A2P12110 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL6A2P12110 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
COL6A2P12110 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.92■□□□□ 0.78
COL6A2P12110 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms