Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
VPS50Q96JG6 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.73■□□□□ 0.75
VPS50Q96JG6 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.73■□□□□ 0.75
VPS50Q96JG6 AC008694.1-202ENST00000636953 945 ntBASIC19.73■□□□□ 0.75
VPS50Q96JG6 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.73■□□□□ 0.75
VPS50Q96JG6 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
VPS50Q96JG6 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC19.73■□□□□ 0.75
VPS50Q96JG6 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS50Q96JG6 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS50Q96JG6 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS50Q96JG6 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
VPS50Q96JG6 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS50Q96JG6 AP005212.1-201ENST00000581547 1997 ntBASIC19.72■□□□□ 0.75
VPS50Q96JG6 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS50Q96JG6 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
VPS50Q96JG6 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS50Q96JG6 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS50Q96JG6 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS50Q96JG6 AL355802.2-201ENST00000402069 882 ntBASIC19.72■□□□□ 0.75
VPS50Q96JG6 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS50Q96JG6 AC083906.2-201ENST00000511578 360 ntBASIC19.72■□□□□ 0.75
VPS50Q96JG6 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.72■□□□□ 0.75
VPS50Q96JG6 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS50Q96JG6 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.72■□□□□ 0.75
VPS50Q96JG6 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
VPS50Q96JG6 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS50Q96JG6 AC073314.1-201ENST00000568729 2216 ntBASIC19.72■□□□□ 0.75
VPS50Q96JG6 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
VPS50Q96JG6 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.72■□□□□ 0.75
VPS50Q96JG6 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS50Q96JG6 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS50Q96JG6 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS50Q96JG6 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS50Q96JG6 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 AC007322.4-201ENST00000509611 723 ntBASIC19.71■□□□□ 0.75
VPS50Q96JG6 AF201337.1-201ENST00000520239 748 ntBASIC19.71■□□□□ 0.75
VPS50Q96JG6 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.71■□□□□ 0.75
VPS50Q96JG6 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS50Q96JG6 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS50Q96JG6 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
VPS50Q96JG6 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
VPS50Q96JG6 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.71■□□□□ 0.75
VPS50Q96JG6 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 AC133552.2-202ENST00000575694 574 ntBASIC19.7■□□□□ 0.74
VPS50Q96JG6 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
VPS50Q96JG6 AFG3L1P-217ENST00000557444 2447 ntBASIC19.7■□□□□ 0.74
VPS50Q96JG6 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.7■□□□□ 0.74
VPS50Q96JG6 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
VPS50Q96JG6 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
VPS50Q96JG6 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS50Q96JG6 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.69■□□□□ 0.74
VPS50Q96JG6 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS50Q96JG6 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.69■□□□□ 0.74
VPS50Q96JG6 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.69■□□□□ 0.74
VPS50Q96JG6 AC069236.1-201ENST00000604339 616 ntBASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms