Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
CLIP4Q8N3C7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 AC116050.2-201ENST00000612102 1779 ntBASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLIP4Q8N3C7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 AC026471.1-201ENST00000564629 3026 ntBASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 AL512408.1-201ENST00000569378 2000 ntBASIC18.9■□□□□ 0.62
CLIP4Q8N3C7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CLIP4Q8N3C7 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CLIP4Q8N3C7 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 HACD1-201ENST00000326961 773 ntTSL 2 BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 RBM17P2-201ENST00000616397 1405 ntBASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CLIP4Q8N3C7 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 KRT19P1-201ENST00000405746 1186 ntBASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 SLC7A5P1-201ENST00000568957 537 ntBASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC18.88■□□□□ 0.61
CLIP4Q8N3C7 AC019069.1-201ENST00000610008 1333 ntBASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms