Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC22.88■■□□□ 1.25
CIITAP33076 AC023632.3-201ENST00000521633 145 ntBASIC22.88■■□□□ 1.25
CIITAP33076 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC22.88■■□□□ 1.25
CIITAP33076 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.88■■□□□ 1.25
CIITAP33076 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC22.88■■□□□ 1.25
CIITAP33076 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CIITAP33076 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC22.87■■□□□ 1.25
CIITAP33076 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CIITAP33076 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CIITAP33076 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC22.87■■□□□ 1.25
CIITAP33076 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
CIITAP33076 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC22.87■■□□□ 1.25
CIITAP33076 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC22.87■■□□□ 1.25
CIITAP33076 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.87■■□□□ 1.25
CIITAP33076 AC005829.2-201ENST00000571422 1056 ntBASIC22.87■■□□□ 1.25
CIITAP33076 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC22.87■■□□□ 1.25
CIITAP33076 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
CIITAP33076 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC22.87■■□□□ 1.25
CIITAP33076 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CIITAP33076 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CIITAP33076 AC092720.2-201ENST00000602388 1665 ntBASIC22.87■■□□□ 1.25
CIITAP33076 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC22.87■■□□□ 1.25
CIITAP33076 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
CIITAP33076 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.86■■□□□ 1.25
CIITAP33076 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CIITAP33076 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC22.86■■□□□ 1.25
CIITAP33076 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC22.86■■□□□ 1.25
CIITAP33076 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC22.86■■□□□ 1.25
CIITAP33076 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CIITAP33076 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CIITAP33076 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.86■■□□□ 1.25
CIITAP33076 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
CIITAP33076 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC22.86■■□□□ 1.25
CIITAP33076 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
CIITAP33076 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CIITAP33076 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
CIITAP33076 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
CIITAP33076 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CIITAP33076 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC22.85■■□□□ 1.25
CIITAP33076 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CIITAP33076 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CIITAP33076 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC22.85■■□□□ 1.25
CIITAP33076 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC22.85■■□□□ 1.25
CIITAP33076 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC22.85■■□□□ 1.25
CIITAP33076 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC22.85■■□□□ 1.25
CIITAP33076 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC22.85■■□□□ 1.25
CIITAP33076 AC008403.3-201ENST00000598924 454 ntBASIC22.85■■□□□ 1.25
CIITAP33076 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC22.85■■□□□ 1.25
CIITAP33076 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
CIITAP33076 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC22.85■■□□□ 1.25
CIITAP33076 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC22.85■■□□□ 1.25
CIITAP33076 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CIITAP33076 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC22.85■■□□□ 1.25
CIITAP33076 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.85■■□□□ 1.25
CIITAP33076 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.85■■□□□ 1.25
CIITAP33076 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
CIITAP33076 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.84■■□□□ 1.25
CIITAP33076 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 H19-201ENST00000411754 1788 ntTSL 5 BASIC22.84■■□□□ 1.25
CIITAP33076 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC22.84■■□□□ 1.25
CIITAP33076 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC22.84■■□□□ 1.25
CIITAP33076 GGT1-206ENST00000404223 952 ntTSL 2 BASIC22.84■■□□□ 1.25
CIITAP33076 TSPY20P-201ENST00000450910 630 ntBASIC22.84■■□□□ 1.25
CIITAP33076 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC22.84■■□□□ 1.25
CIITAP33076 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC22.84■■□□□ 1.25
CIITAP33076 REXO2-208ENST00000539754 791 ntTSL 2 BASIC22.84■■□□□ 1.25
CIITAP33076 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
CIITAP33076 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.84■■□□□ 1.25
CIITAP33076 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
CIITAP33076 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
CIITAP33076 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CIITAP33076 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CIITAP33076 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC22.83■■□□□ 1.25
CIITAP33076 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC22.83■■□□□ 1.25
CIITAP33076 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
CIITAP33076 ABHD17AP1-201ENST00000358206 933 ntBASIC22.83■■□□□ 1.25
CIITAP33076 UNC93B4-201ENST00000505679 747 ntBASIC22.83■■□□□ 1.25
CIITAP33076 MMAB-206ENST00000540016 945 ntTSL 3 BASIC22.83■■□□□ 1.25
CIITAP33076 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC22.83■■□□□ 1.25
CIITAP33076 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC22.83■■□□□ 1.25
CIITAP33076 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
CIITAP33076 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
CIITAP33076 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC22.83■■□□□ 1.24
CIITAP33076 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
CIITAP33076 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC22.82■■□□□ 1.24
CIITAP33076 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
CIITAP33076 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC22.82■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms