Protein–RNA interactions for Protein: P0CH08

RPL40A, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40AP0CH08 YOR218CYOR218C 420 nt0.72□□□□□ -2.29
RPL40AP0CH08 SEC5YDR166C 2916 nt0.71□□□□□ -2.3
RPL40AP0CH08 YCR016WYCR016W 873 nt0.71□□□□□ -2.3
RPL40AP0CH08 SPC1YJR010C-A 285 nt0.71□□□□□ -2.3
RPL40AP0CH08 RPS16AYMR143W 432 nt0.71□□□□□ -2.3
RPL40AP0CH08 YDL009CYDL009C 324 nt0.7□□□□□ -2.3
RPL40AP0CH08 MEI4YER044C-A 1227 nt0.7□□□□□ -2.3
RPL40AP0CH08 YFL012W-AYFL012W-A 375 nt0.7□□□□□ -2.3
RPL40AP0CH08 RPC25YKL144C 639 nt0.7□□□□□ -2.3
RPL40AP0CH08 YLR031WYLR031W 561 nt0.7□□□□□ -2.3
RPL40AP0CH08 PGA1YNL158W 597 nt0.7□□□□□ -2.3
RPL40AP0CH08 SNC2YOR327C 348 nt0.7□□□□□ -2.3
RPL40AP0CH08 GEA2YEL022W 4380 nt0.7□□□□□ -2.3
RPL40AP0CH08 URA10YMR271C 684 nt0.69□□□□□ -2.3
RPL40AP0CH08 YNL226WYNL226W 411 nt0.69□□□□□ -2.3
RPL40AP0CH08 IFH1YLR223C 3258 nt0.69□□□□□ -2.3
RPL40AP0CH08 NUP188YML103C 4968 nt0.68□□□□□ -2.3
RPL40AP0CH08 NHP2YDL208W 471 nt0.68□□□□□ -2.3
RPL40AP0CH08 YDR521WYDR521W 336 nt0.68□□□□□ -2.3
RPL40AP0CH08 YHL002C-AYHL002C-A 489 nt0.68□□□□□ -2.3
RPL40AP0CH08 GSP1YLR293C 660 nt0.68□□□□□ -2.3
RPL40AP0CH08 SLU7YDR088C 1149 nt0.67□□□□□ -2.3
RPL40AP0CH08 RPL16AYIL133C 600 nt0.67□□□□□ -2.3
RPL40AP0CH08 YIR020C-BYIR020C-B 735 nt0.67□□□□□ -2.3
RPL40AP0CH08 YPL034WYPL034W 498 nt0.67□□□□□ -2.3
RPL40AP0CH08 snR24snR24 89 nt0.67□□□□□ -2.3
RPL40AP0CH08 SHS1YDL225W 1656 nt0.67□□□□□ -2.3
RPL40AP0CH08 NOT5YPR072W 1683 nt0.67□□□□□ -2.3
RPL40AP0CH08 ALY2YJL084C 3141 nt0.66□□□□□ -2.3
RPL40AP0CH08 YCR043CYCR043C 384 nt0.66□□□□□ -2.3
RPL40AP0CH08 THG1YGR024C 714 nt0.66□□□□□ -2.3
RPL40AP0CH08 NBL1YHR199C-A 222 nt0.66□□□□□ -2.3
RPL40AP0CH08 YLL020CYLL020C 306 nt0.66□□□□□ -2.3
RPL40AP0CH08 YLR163W-AYLR163W-A 114 nt0.66□□□□□ -2.3
RPL40AP0CH08 YNR068CYNR068C 819 nt0.66□□□□□ -2.3
RPL40AP0CH08 HHT1YBR010W 411 nt0.66□□□□□ -2.3
RPL40AP0CH08 GPX2YBR244W 489 nt0.66□□□□□ -2.3
RPL40AP0CH08 KAR9YPL269W 1935 nt0.66□□□□□ -2.3
RPL40AP0CH08 SEC1YDR164C 2175 nt0.65□□□□□ -2.31
RPL40AP0CH08 YDR194W-AYDR194W-A 153 nt0.65□□□□□ -2.31
RPL40AP0CH08 BTN2YGR142W 1233 nt0.65□□□□□ -2.31
RPL40AP0CH08 EMC5YIL027C 426 nt0.65□□□□□ -2.31
RPL40AP0CH08 PSF2YJL072C 642 nt0.65□□□□□ -2.31
RPL40AP0CH08 ATG16YMR159C 453 nt0.65□□□□□ -2.31
RPL40AP0CH08 SPR3YGR059W 1539 nt0.64□□□□□ -2.31
RPL40AP0CH08 YLL054CYLL054C 2532 nt0.64□□□□□ -2.31
RPL40AP0CH08 YHL009W-AYHL009W-A 1242 nt0.64□□□□□ -2.31
RPL40AP0CH08 STE5YDR103W 2754 nt0.64□□□□□ -2.31
RPL40AP0CH08 YDR261W-AYDR261W-A 1317 nt0.64□□□□□ -2.31
RPL40AP0CH08 SAS3YBL052C 2496 nt0.63□□□□□ -2.31
RPL40AP0CH08 RSM28YDR494W 1086 nt0.63□□□□□ -2.31
RPL40AP0CH08 ULI1YFR026C 510 nt0.63□□□□□ -2.31
RPL40AP0CH08 RAD6YGL058W 519 nt0.63□□□□□ -2.31
RPL40AP0CH08 YGL204CYGL204C 306 nt0.63□□□□□ -2.31
RPL40AP0CH08 LAG1YHL003C 1236 nt0.63□□□□□ -2.31
RPL40AP0CH08 FYV6YNL133C 522 nt0.63□□□□□ -2.31
RPL40AP0CH08 IRC14YOR135C 342 nt0.63□□□□□ -2.31
RPL40AP0CH08 YOR169CYOR169C 465 nt0.63□□□□□ -2.31
RPL40AP0CH08 snR44snR44 211 nt0.63□□□□□ -2.31
RPL40AP0CH08 OSH6YKR003W 1347 nt0.63□□□□□ -2.31
RPL40AP0CH08 KAP120YPL125W 3099 nt0.62□□□□□ -2.31
RPL40AP0CH08 FMP23YBR047W 528 nt0.62□□□□□ -2.31
RPL40AP0CH08 RTC6YPL183W-A 282 nt0.62□□□□□ -2.31
RPL40AP0CH08 YBR224WYBR224W 516 nt0.62□□□□□ -2.31
RPL40AP0CH08 SGD1YLR336C 2700 nt0.62□□□□□ -2.31
RPL40AP0CH08 RPL9AYGL147C 576 nt0.61□□□□□ -2.31
RPL40AP0CH08 BET4YJL031C 984 nt0.61□□□□□ -2.31
RPL40AP0CH08 CGI121YML036W 546 nt0.61□□□□□ -2.31
RPL40AP0CH08 PHO80YOL001W 882 nt0.61□□□□□ -2.31
RPL40AP0CH08 YOR105WYOR105W 327 nt0.61□□□□□ -2.31
RPL40AP0CH08 YOR161W-BYOR161W-B 261 nt0.61□□□□□ -2.31
RPL40AP0CH08 SLX4YLR135W 2247 nt0.61□□□□□ -2.31
RPL40AP0CH08 RIM20YOR275C 1986 nt0.61□□□□□ -2.31
RPL40AP0CH08 YCS4YLR272C 3531 nt0.6□□□□□ -2.31
RPL40AP0CH08 YGL217CYGL217C 342 nt0.6□□□□□ -2.31
RPL40AP0CH08 UBX4YMR067C 1251 nt0.6□□□□□ -2.31
RPL40AP0CH08 YMR272W-AYMR272W-A 114 nt0.6□□□□□ -2.31
RPL40AP0CH08 LTE1YAL024C 4308 nt0.59□□□□□ -2.31
RPL40AP0CH08 NTF2YER009W 378 nt0.59□□□□□ -2.31
RPL40AP0CH08 RSM18YER050C 417 nt0.59□□□□□ -2.31
RPL40AP0CH08 YKL183C-AYKL183C-A 213 nt0.59□□□□□ -2.31
RPL40AP0CH08 RPL40BYKR094C 387 nt0.59□□□□□ -2.31
RPL40AP0CH08 RPL9BYNL067W 576 nt0.59□□□□□ -2.31
RPL40AP0CH08 YNL179CYNL179C 438 nt0.59□□□□□ -2.31
RPL40AP0CH08 YOR366WYOR366W 354 nt0.59□□□□□ -2.31
RPL40AP0CH08 PEP3YLR148W 2757 nt0.59□□□□□ -2.32
RPL40AP0CH08 SGO1YOR073W 1773 nt0.58□□□□□ -2.32
RPL40AP0CH08 ATC1YDR184C 885 nt0.58□□□□□ -2.32
RPL40AP0CH08 PRM8YGL053W 714 nt0.58□□□□□ -2.32
RPL40AP0CH08 YIR020CYIR020C 303 nt0.58□□□□□ -2.32
RPL40AP0CH08 YMR075C-AYMR075C-A 366 nt0.57□□□□□ -2.32
RPL40AP0CH08 SWS2YNL081C 432 nt0.57□□□□□ -2.32
RPL40AP0CH08 ATP15YPL271W 189 nt0.57□□□□□ -2.32
RPL40AP0CH08 ABM1YJR108W 372 nt0.56□□□□□ -2.32
RPL40AP0CH08 GPX1YKL026C 504 nt0.56□□□□□ -2.32
RPL40AP0CH08 IRC23YOR044W 474 nt0.56□□□□□ -2.32
RPL40AP0CH08 ROX1YPR065W 1107 nt0.56□□□□□ -2.32
RPL40AP0CH08 RTR2YDR066C 591 nt0.55□□□□□ -2.32
RPL40AP0CH08 RPL29YFR032C-A 180 nt0.55□□□□□ -2.32
RPL40AP0CH08 GEP7YGL057C 864 nt0.55□□□□□ -2.32
Retrieved 100 of 7,029 protein–RNA pairs in 45.8 ms