Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
UPK1AO00322 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.22■□□□□ 0.67
UPK1AO00322 AC010536.3-201ENST00000620306 533 ntBASIC19.22■□□□□ 0.67
UPK1AO00322 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
UPK1AO00322 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.22■□□□□ 0.67
UPK1AO00322 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UPK1AO00322 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.22■□□□□ 0.67
UPK1AO00322 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.21■□□□□ 0.67
UPK1AO00322 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.21■□□□□ 0.67
UPK1AO00322 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK1AO00322 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC19.21■□□□□ 0.67
UPK1AO00322 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.21■□□□□ 0.67
UPK1AO00322 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
UPK1AO00322 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.21■□□□□ 0.67
UPK1AO00322 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.21■□□□□ 0.67
UPK1AO00322 MIR935-201ENST00000401179 91 ntBASIC19.21■□□□□ 0.67
UPK1AO00322 AC016769.1-201ENST00000409132 1010 ntBASIC19.21■□□□□ 0.67
UPK1AO00322 AC006015.1-201ENST00000429970 570 ntBASIC19.21■□□□□ 0.67
UPK1AO00322 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.21■□□□□ 0.67
UPK1AO00322 TERF1P5-201ENST00000477545 1207 ntBASIC19.21■□□□□ 0.67
UPK1AO00322 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UPK1AO00322 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UPK1AO00322 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
UPK1AO00322 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.21■□□□□ 0.67
UPK1AO00322 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UPK1AO00322 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.21■□□□□ 0.67
UPK1AO00322 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.2■□□□□ 0.66
UPK1AO00322 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.2■□□□□ 0.66
UPK1AO00322 TCF3P1-201ENST00000423021 1937 ntBASIC19.2■□□□□ 0.66
UPK1AO00322 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
UPK1AO00322 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.2■□□□□ 0.66
UPK1AO00322 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.2■□□□□ 0.66
UPK1AO00322 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
UPK1AO00322 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
UPK1AO00322 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
UPK1AO00322 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
UPK1AO00322 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.19■□□□□ 0.66
UPK1AO00322 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.19■□□□□ 0.66
UPK1AO00322 MFSD11-216ENST00000590393 1141 ntBASIC19.19■□□□□ 0.66
UPK1AO00322 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
UPK1AO00322 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.19■□□□□ 0.66
UPK1AO00322 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
UPK1AO00322 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.19■□□□□ 0.66
UPK1AO00322 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
UPK1AO00322 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
UPK1AO00322 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
UPK1AO00322 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
UPK1AO00322 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
UPK1AO00322 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
UPK1AO00322 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
UPK1AO00322 AC007322.3-201ENST00000426526 701 ntBASIC19.18■□□□□ 0.66
UPK1AO00322 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.18■□□□□ 0.66
UPK1AO00322 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.18■□□□□ 0.66
UPK1AO00322 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC19.18■□□□□ 0.66
UPK1AO00322 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
UPK1AO00322 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.18■□□□□ 0.66
UPK1AO00322 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
UPK1AO00322 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.18■□□□□ 0.66
UPK1AO00322 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
UPK1AO00322 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
UPK1AO00322 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
UPK1AO00322 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
UPK1AO00322 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.18■□□□□ 0.66
UPK1AO00322 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms