Protein–RNA interactions for Protein: P0CH09

RPL40B, Ubiquitin-60S ribosomal protein L40, yeastyeast

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPL40BP0CH09 MTC7YEL033W 420 nt0.82□□□□□ -2.28
RPL40BP0CH09 EDC1YGL222C 528 nt0.82□□□□□ -2.28
RPL40BP0CH09 FSH1YHR049W 732 nt0.82□□□□□ -2.28
RPL40BP0CH09 COX6YHR051W 447 nt0.82□□□□□ -2.28
RPL40BP0CH09 YNR021WYNR021W 1215 nt0.82□□□□□ -2.28
RPL40BP0CH09 YOL150CYOL150C 312 nt0.82□□□□□ -2.28
RPL40BP0CH09 MIC19YFR011C 513 nt0.81□□□□□ -2.28
RPL40BP0CH09 SMD1YGR074W 441 nt0.81□□□□□ -2.28
RPL40BP0CH09 PRS3YHL011C 963 nt0.81□□□□□ -2.28
RPL40BP0CH09 RPI1YIL119C 1224 nt0.81□□□□□ -2.28
RPL40BP0CH09 BUD19YJL188C 309 nt0.81□□□□□ -2.28
RPL40BP0CH09 YKL115CYKL115C 393 nt0.81□□□□□ -2.28
RPL40BP0CH09 HSK3YKL138C-A 210 nt0.81□□□□□ -2.28
RPL40BP0CH09 SWM2YNR004W 441 nt0.81□□□□□ -2.28
RPL40BP0CH09 RRP15YPR143W 753 nt0.81□□□□□ -2.28
RPL40BP0CH09 AZF1YOR113W 2745 nt0.8□□□□□ -2.28
RPL40BP0CH09 YGR250CYGR250C 2346 nt0.8□□□□□ -2.28
RPL40BP0CH09 EMT1tM(CAU)D 73 nt0.8□□□□□ -2.28
RPL40BP0CH09 EMT5tM(CAU)J1 73 nt0.8□□□□□ -2.28
RPL40BP0CH09 EMT3tM(CAU)J2 73 nt0.8□□□□□ -2.28
RPL40BP0CH09 EMT4tM(CAU)M 73 nt0.8□□□□□ -2.28
RPL40BP0CH09 EMT2tM(CAU)O2 73 nt0.8□□□□□ -2.28
RPL40BP0CH09 VOA1YGR106C 798 nt0.8□□□□□ -2.28
RPL40BP0CH09 HYR1YIR037W 492 nt0.8□□□□□ -2.28
RPL40BP0CH09 TRS20YBR254C 528 nt0.8□□□□□ -2.28
RPL40BP0CH09 YEL010WYEL010W 351 nt0.79□□□□□ -2.28
RPL40BP0CH09 LSM4YER112W 564 nt0.79□□□□□ -2.28
RPL40BP0CH09 YIP1YGR172C 747 nt0.79□□□□□ -2.28
RPL40BP0CH09 YJL022WYJL022W 309 nt0.79□□□□□ -2.28
RPL40BP0CH09 IRC19YLL033W 693 nt0.79□□□□□ -2.28
RPL40BP0CH09 YDR210W-AYDR210W-A 1317 nt0.79□□□□□ -2.28
RPL40BP0CH09 YOR343W-AYOR343W-A 1317 nt0.79□□□□□ -2.28
RPL40BP0CH09 ALK1YGL021W 2283 nt0.78□□□□□ -2.28
RPL40BP0CH09 SWI4YER111C 3282 nt0.78□□□□□ -2.28
RPL40BP0CH09 YER087C-AYER087C-A 552 nt0.78□□□□□ -2.28
RPL40BP0CH09 COX8YLR395C 237 nt0.78□□□□□ -2.28
RPL40BP0CH09 ERP4YOR016C 624 nt0.78□□□□□ -2.28
RPL40BP0CH09 OST2YOR103C 393 nt0.78□□□□□ -2.28
RPL40BP0CH09 CUR1YPR158W 759 nt0.78□□□□□ -2.28
RPL40BP0CH09 MGR1YCL044C 1254 nt0.78□□□□□ -2.28
RPL40BP0CH09 COF1YLL050C 432 nt0.77□□□□□ -2.29
RPL40BP0CH09 YOL024WYOL024W 519 nt0.77□□□□□ -2.29
RPL40BP0CH09 YOR020W-AYOR020W-A 273 nt0.77□□□□□ -2.29
RPL40BP0CH09 ESA1YOR244W 1338 nt0.77□□□□□ -2.29
RPL40BP0CH09 MUD2YKL074C 1584 nt0.77□□□□□ -2.29
RPL40BP0CH09 DAS1YJL149W 1992 nt0.77□□□□□ -2.29
RPL40BP0CH09 NGG1YDR176W 2109 nt0.77□□□□□ -2.29
RPL40BP0CH09 CDC39YCR093W 6327 nt0.77□□□□□ -2.29
RPL40BP0CH09 MUK1YPL070W 1839 nt0.76□□□□□ -2.29
RPL40BP0CH09 YJL156W-AYJL156W-A 222 nt0.76□□□□□ -2.29
RPL40BP0CH09 HOT13YKL084W 351 nt0.76□□□□□ -2.29
RPL40BP0CH09 RPS18BYML026C 441 nt0.76□□□□□ -2.29
RPL40BP0CH09 YMR173W-AYMR173W-A 1185 nt0.76□□□□□ -2.29
RPL40BP0CH09 YOL118CYOL118C 309 nt0.76□□□□□ -2.29
RPL40BP0CH09 YPR063CYPR063C 423 nt0.76□□□□□ -2.29
RPL40BP0CH09 IQG1YPL242C 4488 nt0.75□□□□□ -2.29
RPL40BP0CH09 YML002WYML002W 2214 nt0.75□□□□□ -2.29
RPL40BP0CH09 YJL127C-BYJL127C-B 159 nt0.75□□□□□ -2.29
RPL40BP0CH09 SMD2YLR275W 333 nt0.75□□□□□ -2.29
RPL40BP0CH09 YLR458WYLR458W 381 nt0.75□□□□□ -2.29
RPL40BP0CH09 YNL010WYNL010W 726 nt0.75□□□□□ -2.29
RPL40BP0CH09 NDD1YOR372C 1665 nt0.75□□□□□ -2.29
RPL40BP0CH09 MVP1YMR004W 1536 nt0.74□□□□□ -2.29
RPL40BP0CH09 SMY1YKL079W 1971 nt0.74□□□□□ -2.29
RPL40BP0CH09 MZM1YDR493W 372 nt0.74□□□□□ -2.29
RPL40BP0CH09 YER078W-AYER078W-A 165 nt0.74□□□□□ -2.29
RPL40BP0CH09 RFA3YJL173C 369 nt0.74□□□□□ -2.29
RPL40BP0CH09 GRX8YLR364W 330 nt0.74□□□□□ -2.29
RPL40BP0CH09 TIF11YMR260C 462 nt0.74□□□□□ -2.29
RPL40BP0CH09 KAP122YGL016W 3246 nt0.74□□□□□ -2.29
RPL40BP0CH09 RLM1YPL089C 2031 nt0.74□□□□□ -2.29
RPL40BP0CH09 DGR2YKL121W 2559 nt0.73□□□□□ -2.29
RPL40BP0CH09 MSC6YOR354C 2079 nt0.73□□□□□ -2.29
RPL40BP0CH09 TSA2YDR453C 591 nt0.73□□□□□ -2.29
RPL40BP0CH09 TMA20YER007C-A 546 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)BtT(AGU)B 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)CtT(AGU)C 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)DtT(AGU)D 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)HtT(AGU)H 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)I1tT(AGU)I1 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)I2tT(AGU)I2 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)JtT(AGU)J 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)N1tT(AGU)N1 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)N2tT(AGU)N2 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)O1tT(AGU)O1 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 tT(AGU)O2tT(AGU)O2 73 nt0.73□□□□□ -2.29
RPL40BP0CH09 RPL40AYIL148W 387 nt0.73□□□□□ -2.29
RPL40BP0CH09 IST3YIR005W 447 nt0.73□□□□□ -2.29
RPL40BP0CH09 VPS55YJR044C 423 nt0.73□□□□□ -2.29
RPL40BP0CH09 YAL064WYAL064W 285 nt0.73□□□□□ -2.29
RPL40BP0CH09 CMC4YMR194C-B 222 nt0.73□□□□□ -2.29
RPL40BP0CH09 IRC13YOR235W 315 nt0.73□□□□□ -2.29
RPL40BP0CH09 snR14snR14 160 nt0.73□□□□□ -2.29
RPL40BP0CH09 YOR376WYOR376W 369 nt0.73□□□□□ -2.29
RPL40BP0CH09 YBR051WYBR051W 351 nt0.73□□□□□ -2.29
RPL40BP0CH09 PET20YPL159C 762 nt0.73□□□□□ -2.29
RPL40BP0CH09 snR34snR34 203 nt0.73□□□□□ -2.29
RPL40BP0CH09 FMP27YLR454W 7887 nt0.73□□□□□ -2.29
RPL40BP0CH09 YER088C-AYER088C-A 324 nt0.72□□□□□ -2.29
RPL40BP0CH09 ATP18YML081C-A 180 nt0.72□□□□□ -2.29
Retrieved 100 of 7,029 protein–RNA pairs in 112.4 ms