Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS35Q96QK1 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 AL355802.2-201ENST00000402069 882 ntBASIC20.22■□□□□ 0.83
VPS35Q96QK1 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS35Q96QK1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS35Q96QK1 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS35Q96QK1 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS35Q96QK1 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS35Q96QK1 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS35Q96QK1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS35Q96QK1 KRT8P36-201ENST00000489121 1440 ntBASIC20.21■□□□□ 0.83
VPS35Q96QK1 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS35Q96QK1 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS35Q96QK1 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS35Q96QK1 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
VPS35Q96QK1 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS35Q96QK1 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
VPS35Q96QK1 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS35Q96QK1 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
VPS35Q96QK1 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS35Q96QK1 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS35Q96QK1 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS35Q96QK1 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
VPS35Q96QK1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS35Q96QK1 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS35Q96QK1 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS35Q96QK1 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS35Q96QK1 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS35Q96QK1 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS35Q96QK1 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VPS35Q96QK1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
VPS35Q96QK1 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS35Q96QK1 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS35Q96QK1 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS35Q96QK1 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.2■□□□□ 0.82
VPS35Q96QK1 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
VPS35Q96QK1 AC069152.1-201ENST00000438030 544 ntBASIC20.2■□□□□ 0.82
VPS35Q96QK1 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.2■□□□□ 0.82
VPS35Q96QK1 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
VPS35Q96QK1 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS35Q96QK1 AC133041.1-202ENST00000642053 222 ntBASIC20.2■□□□□ 0.82
VPS35Q96QK1 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS35Q96QK1 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS35Q96QK1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS35Q96QK1 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
VPS35Q96QK1 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS35Q96QK1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS35Q96QK1 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS35Q96QK1 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS35Q96QK1 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS35Q96QK1 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
VPS35Q96QK1 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS35Q96QK1 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS35Q96QK1 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS35Q96QK1 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VPS35Q96QK1 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS35Q96QK1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS35Q96QK1 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
VPS35Q96QK1 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS35Q96QK1 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 AC007225.1-201ENST00000566331 1836 ntBASIC20.18■□□□□ 0.82
VPS35Q96QK1 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
VPS35Q96QK1 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.18■□□□□ 0.82
VPS35Q96QK1 RGMA-211ENST00000557420 989 ntTSL 3 BASIC20.18■□□□□ 0.82
VPS35Q96QK1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.18■□□□□ 0.82
VPS35Q96QK1 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.18■□□□□ 0.82
VPS35Q96QK1 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
VPS35Q96QK1 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
VPS35Q96QK1 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
VPS35Q96QK1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS35Q96QK1 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS35Q96QK1 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS35Q96QK1 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS35Q96QK1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
VPS35Q96QK1 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 AC091874.3-201ENST00000512672 1195 ntBASIC20.17■□□□□ 0.82
VPS35Q96QK1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.17■□□□□ 0.82
VPS35Q96QK1 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms