Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SDC1P18827 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.41■□□□□ 0.7
SDC1P18827 KRT8P36-201ENST00000489121 1440 ntBASIC19.41■□□□□ 0.7
SDC1P18827 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.4■□□□□ 0.7
SDC1P18827 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.4■□□□□ 0.7
SDC1P18827 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.4■□□□□ 0.7
SDC1P18827 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.4■□□□□ 0.7
SDC1P18827 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.4■□□□□ 0.7
SDC1P18827 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SDC1P18827 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
SDC1P18827 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SDC1P18827 TCF3P1-201ENST00000423021 1937 ntBASIC19.39■□□□□ 0.7
SDC1P18827 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.39■□□□□ 0.69
SDC1P18827 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.39■□□□□ 0.69
SDC1P18827 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.39■□□□□ 0.69
SDC1P18827 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SDC1P18827 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
SDC1P18827 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.39■□□□□ 0.69
SDC1P18827 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SDC1P18827 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.39■□□□□ 0.69
SDC1P18827 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SDC1P18827 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
SDC1P18827 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SDC1P18827 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC1P18827 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC1P18827 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.38■□□□□ 0.69
SDC1P18827 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC1P18827 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SDC1P18827 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SDC1P18827 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.38■□□□□ 0.69
SDC1P18827 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SDC1P18827 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC1P18827 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SDC1P18827 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
SDC1P18827 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SDC1P18827 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SDC1P18827 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.37■□□□□ 0.69
SDC1P18827 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SDC1P18827 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.37■□□□□ 0.69
SDC1P18827 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.37■□□□□ 0.69
SDC1P18827 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.37■□□□□ 0.69
SDC1P18827 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.37■□□□□ 0.69
SDC1P18827 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC19.37■□□□□ 0.69
SDC1P18827 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SDC1P18827 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 CDV3P1-201ENST00000471403 739 ntBASIC19.37■□□□□ 0.69
SDC1P18827 NTF6G-201ENST00000591094 616 ntBASIC19.37■□□□□ 0.69
SDC1P18827 FAM21FP-204ENST00000608637 956 ntBASIC19.37■□□□□ 0.69
SDC1P18827 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SDC1P18827 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.37■□□□□ 0.69
SDC1P18827 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.37■□□□□ 0.69
SDC1P18827 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SDC1P18827 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.36■□□□□ 0.69
SDC1P18827 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC1P18827 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SDC1P18827 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.36■□□□□ 0.69
SDC1P18827 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SDC1P18827 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.36■□□□□ 0.69
SDC1P18827 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.36■□□□□ 0.69
SDC1P18827 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.36■□□□□ 0.69
SDC1P18827 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC1P18827 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SDC1P18827 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
SDC1P18827 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC1P18827 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.36■□□□□ 0.69
SDC1P18827 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
SDC1P18827 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.36■□□□□ 0.69
SDC1P18827 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SDC1P18827 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.36■□□□□ 0.69
SDC1P18827 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SDC1P18827 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
SDC1P18827 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms