Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 CYP2T3P-201ENST00000601990 817 ntBASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
RPAP1Q9BWH6 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
RPAP1Q9BWH6 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC24.83■■□□□ 1.56
RPAP1Q9BWH6 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 LSM12P1-201ENST00000411836 588 ntBASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 AC128676.1-201ENST00000454392 318 ntBASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
RPAP1Q9BWH6 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 MMD2-204ENST00000612910 778 ntTSL 5 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC24.81■■□□□ 1.56
RPAP1Q9BWH6 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 SAPCD2P1-201ENST00000395413 1184 ntBASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 CDV3P1-201ENST00000471403 739 ntBASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
RPAP1Q9BWH6 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 PTPA-214ENST00000423100 988 ntTSL 2 BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 AC060766.5-201ENST00000590539 871 ntBASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
RPAP1Q9BWH6 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC24.78■■□□□ 1.56
RPAP1Q9BWH6 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RPAP1Q9BWH6 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC24.78■■□□□ 1.56
RPAP1Q9BWH6 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC24.78■■□□□ 1.56
RPAP1Q9BWH6 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
RPAP1Q9BWH6 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC24.78■■□□□ 1.56
RPAP1Q9BWH6 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC24.78■■□□□ 1.56
RPAP1Q9BWH6 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC24.78■■□□□ 1.56
RPAP1Q9BWH6 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms