Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
Trim54Q9ERP3 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
Trim54Q9ERP3 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
Trim54Q9ERP3 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.56■■□□□ 1.84
Trim54Q9ERP3 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
Trim54Q9ERP3 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
Trim54Q9ERP3 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC26.53■■□□□ 1.84
Trim54Q9ERP3 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Trim54Q9ERP3 Gm7432-201ENSMUST00000210343 879 ntBASIC26.53■■□□□ 1.84
Trim54Q9ERP3 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC26.52■■□□□ 1.84
Trim54Q9ERP3 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Trim54Q9ERP3 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC26.51■■□□□ 1.83
Trim54Q9ERP3 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim54Q9ERP3 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
Trim54Q9ERP3 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
Trim54Q9ERP3 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Trim54Q9ERP3 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
Trim54Q9ERP3 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
Trim54Q9ERP3 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC26.49■■□□□ 1.83
Trim54Q9ERP3 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
Trim54Q9ERP3 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC26.48■■□□□ 1.83
Trim54Q9ERP3 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Trim54Q9ERP3 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC26.47■■□□□ 1.83
Trim54Q9ERP3 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
Trim54Q9ERP3 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
Trim54Q9ERP3 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Trim54Q9ERP3 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
Trim54Q9ERP3 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC26.44■■□□□ 1.82
Trim54Q9ERP3 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
Trim54Q9ERP3 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
Trim54Q9ERP3 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC26.42■■□□□ 1.82
Trim54Q9ERP3 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Trim54Q9ERP3 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Trim54Q9ERP3 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Trim54Q9ERP3 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
Trim54Q9ERP3 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
Trim54Q9ERP3 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC26.4■■□□□ 1.82
Trim54Q9ERP3 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
Trim54Q9ERP3 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26.38■■□□□ 1.81
Trim54Q9ERP3 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Trim54Q9ERP3 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Trim54Q9ERP3 Gm11599-201ENSMUST00000118720 878 ntBASIC26.35■■□□□ 1.81
Trim54Q9ERP3 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Trim54Q9ERP3 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trim54Q9ERP3 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Trim54Q9ERP3 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Trim54Q9ERP3 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26.34■■□□□ 1.81
Trim54Q9ERP3 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC26.34■■□□□ 1.81
Trim54Q9ERP3 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC26.33■■□□□ 1.81
Trim54Q9ERP3 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC26.33■■□□□ 1.81
Trim54Q9ERP3 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
Trim54Q9ERP3 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Trim54Q9ERP3 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
Trim54Q9ERP3 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trim54Q9ERP3 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
Trim54Q9ERP3 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC26.31■■□□□ 1.8
Trim54Q9ERP3 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trim54Q9ERP3 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trim54Q9ERP3 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Trim54Q9ERP3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trim54Q9ERP3 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trim54Q9ERP3 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Trim54Q9ERP3 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Trim54Q9ERP3 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC26.26■■□□□ 1.79
Trim54Q9ERP3 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim54Q9ERP3 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.25■■□□□ 1.79
Trim54Q9ERP3 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Trim54Q9ERP3 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Trim54Q9ERP3 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26.24■■□□□ 1.79
Trim54Q9ERP3 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Trim54Q9ERP3 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim54Q9ERP3 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim54Q9ERP3 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Trim54Q9ERP3 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Trim54Q9ERP3 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC26.21■■□□□ 1.79
Trim54Q9ERP3 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC26.21■■□□□ 1.79
Trim54Q9ERP3 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC26.2■■□□□ 1.79
Trim54Q9ERP3 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.79
Trim54Q9ERP3 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Trim54Q9ERP3 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.78
Trim54Q9ERP3 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Trim54Q9ERP3 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim54Q9ERP3 Gm30023-201ENSMUST00000197970 889 ntBASIC26.17■■□□□ 1.78
Trim54Q9ERP3 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.16■■□□□ 1.78
Trim54Q9ERP3 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Trim54Q9ERP3 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.77
Trim54Q9ERP3 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC26.13■■□□□ 1.77
Trim54Q9ERP3 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms