Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC16.55■□□□□ 0.24
Trav4-3A0A0B4J1K1 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Trav4-3A0A0B4J1K1 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav4-3A0A0B4J1K1 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav4-3A0A0B4J1K1 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trav4-3A0A0B4J1K1 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC16.54■□□□□ 0.24
Trav4-3A0A0B4J1K1 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC16.53■□□□□ 0.24
Trav4-3A0A0B4J1K1 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Trav4-3A0A0B4J1K1 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav4-3A0A0B4J1K1 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trav4-3A0A0B4J1K1 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav4-3A0A0B4J1K1 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav4-3A0A0B4J1K1 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trav4-3A0A0B4J1K1 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Trav4-3A0A0B4J1K1 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC16.51■□□□□ 0.23
Trav4-3A0A0B4J1K1 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav4-3A0A0B4J1K1 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trav4-3A0A0B4J1K1 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trav4-3A0A0B4J1K1 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav4-3A0A0B4J1K1 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trav4-3A0A0B4J1K1 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav4-3A0A0B4J1K1 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Trav4-3A0A0B4J1K1 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav4-3A0A0B4J1K1 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC16.48■□□□□ 0.23
Trav4-3A0A0B4J1K1 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trav4-3A0A0B4J1K1 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trav4-3A0A0B4J1K1 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav4-3A0A0B4J1K1 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav4-3A0A0B4J1K1 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Trav4-3A0A0B4J1K1 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trav4-3A0A0B4J1K1 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav4-3A0A0B4J1K1 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trav4-3A0A0B4J1K1 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav4-3A0A0B4J1K1 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav4-3A0A0B4J1K1 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav4-3A0A0B4J1K1 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav4-3A0A0B4J1K1 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
Trav4-3A0A0B4J1K1 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav4-3A0A0B4J1K1 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trav4-3A0A0B4J1K1 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trav4-3A0A0B4J1K1 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Trav4-3A0A0B4J1K1 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav4-3A0A0B4J1K1 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Trav4-3A0A0B4J1K1 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC16.43■□□□□ 0.22
Trav4-3A0A0B4J1K1 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Trav4-3A0A0B4J1K1 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
Trav4-3A0A0B4J1K1 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Trav4-3A0A0B4J1K1 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav4-3A0A0B4J1K1 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Trav4-3A0A0B4J1K1 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav4-3A0A0B4J1K1 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Trav4-3A0A0B4J1K1 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav4-3A0A0B4J1K1 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Trav4-3A0A0B4J1K1 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav4-3A0A0B4J1K1 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
Trav4-3A0A0B4J1K1 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Trav4-3A0A0B4J1K1 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav4-3A0A0B4J1K1 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
Trav4-3A0A0B4J1K1 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
Trav4-3A0A0B4J1K1 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav4-3A0A0B4J1K1 Plvap-201ENSMUST00000048452 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Trav4-3A0A0B4J1K1 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Trav4-3A0A0B4J1K1 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Trav4-3A0A0B4J1K1 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
Trav4-3A0A0B4J1K1 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav4-3A0A0B4J1K1 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC16.36■□□□□ 0.21
Trav4-3A0A0B4J1K1 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC16.36■□□□□ 0.21
Trav4-3A0A0B4J1K1 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav4-3A0A0B4J1K1 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
Trav4-3A0A0B4J1K1 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Trav4-3A0A0B4J1K1 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
Trav4-3A0A0B4J1K1 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Trav4-3A0A0B4J1K1 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Trav4-3A0A0B4J1K1 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav4-3A0A0B4J1K1 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Trav4-3A0A0B4J1K1 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Trav4-3A0A0B4J1K1 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav4-3A0A0B4J1K1 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav4-3A0A0B4J1K1 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav4-3A0A0B4J1K1 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav4-3A0A0B4J1K1 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trav4-3A0A0B4J1K1 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Trav4-3A0A0B4J1K1 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Trav4-3A0A0B4J1K1 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Trav4-3A0A0B4J1K1 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
Trav4-3A0A0B4J1K1 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav4-3A0A0B4J1K1 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Trav4-3A0A0B4J1K1 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav4-3A0A0B4J1K1 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Trav4-3A0A0B4J1K1 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav4-3A0A0B4J1K1 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC16.32■□□□□ 0.2
Trav4-3A0A0B4J1K1 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Trav4-3A0A0B4J1K1 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav4-3A0A0B4J1K1 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav4-3A0A0B4J1K1 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav4-3A0A0B4J1K1 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Trav4-3A0A0B4J1K1 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Trav4-3A0A0B4J1K1 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC16.3■□□□□ 0.2
Trav4-3A0A0B4J1K1 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Trav4-3A0A0B4J1K1 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 79.1 ms