Protein–RNA interactions for Protein: A0A0A6YXF1

Ighv3-4, Immunoglobulin heavy variable V3-4 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ighv3-4A0A0A6YXF1 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Ighv3-4A0A0A6YXF1 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ighv3-4A0A0A6YXF1 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.55■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.55■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC20.55■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ighv3-4A0A0A6YXF1 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.53■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC20.53■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC20.53■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.52■□□□□ 0.88
Ighv3-4A0A0A6YXF1 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC20.46■□□□□ 0.87
Ighv3-4A0A0A6YXF1 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Ighv3-4A0A0A6YXF1 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.45■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.43■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC20.42■□□□□ 0.86
Ighv3-4A0A0A6YXF1 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Gas1-202ENSMUST00000223933 1155 ntAPPRIS P2 BASIC20.42■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC20.42■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC20.4■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.39■□□□□ 0.86
Ighv3-4A0A0A6YXF1 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Mir6538-201ENSMUST00000183713 110 ntBASIC20.39■□□□□ 0.85
Ighv3-4A0A0A6YXF1 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.39■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.38■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Ighv3-4A0A0A6YXF1 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Ighv3-4A0A0A6YXF1 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Cadm1-210ENSMUST00000214542 899 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.33■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.33■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Ighv3-4A0A0A6YXF1 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Gm11175-201ENSMUST00000116172 543 ntBASIC20.32■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Ighv3-4A0A0A6YXF1 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC20.29■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Gm6311-201ENSMUST00000073790 878 ntBASIC20.27■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Ighv3-4A0A0A6YXF1 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.26■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Ighv3-4A0A0A6YXF1 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Ighv3-4A0A0A6YXF1 AC167019.3-201ENSMUST00000228225 1266 ntBASIC20.23■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Particl-201ENSMUST00000205370 1560 ntBASIC20.22■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Gm30023-201ENSMUST00000197970 889 ntBASIC20.22■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Ighv3-4A0A0A6YXF1 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ighv3-4A0A0A6YXF1 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Ighv3-4A0A0A6YXF1 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Ighv3-4A0A0A6YXF1 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Ighv3-4A0A0A6YXF1 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
Ighv3-4A0A0A6YXF1 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Ighv3-4A0A0A6YXF1 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms