Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav16d-dv11A0A075B617 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav16d-dv11A0A075B617 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav16d-dv11A0A075B617 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav16d-dv11A0A075B617 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav16d-dv11A0A075B617 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav16d-dv11A0A075B617 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav16d-dv11A0A075B617 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC17.72■□□□□ 0.43
Trav16d-dv11A0A075B617 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav16d-dv11A0A075B617 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC17.71■□□□□ 0.43
Trav16d-dv11A0A075B617 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav16d-dv11A0A075B617 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
Trav16d-dv11A0A075B617 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav16d-dv11A0A075B617 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trav16d-dv11A0A075B617 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
Trav16d-dv11A0A075B617 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav16d-dv11A0A075B617 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav16d-dv11A0A075B617 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Trav16d-dv11A0A075B617 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav16d-dv11A0A075B617 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trav16d-dv11A0A075B617 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav16d-dv11A0A075B617 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trav16d-dv11A0A075B617 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.7■□□□□ 0.42
Trav16d-dv11A0A075B617 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC17.7■□□□□ 0.42
Trav16d-dv11A0A075B617 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC17.69■□□□□ 0.42
Trav16d-dv11A0A075B617 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav16d-dv11A0A075B617 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav16d-dv11A0A075B617 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav16d-dv11A0A075B617 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trav16d-dv11A0A075B617 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC17.65■□□□□ 0.42
Trav16d-dv11A0A075B617 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav16d-dv11A0A075B617 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav16d-dv11A0A075B617 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav16d-dv11A0A075B617 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav16d-dv11A0A075B617 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav16d-dv11A0A075B617 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav16d-dv11A0A075B617 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trav16d-dv11A0A075B617 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC17.61■□□□□ 0.41
Trav16d-dv11A0A075B617 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Trav16d-dv11A0A075B617 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
Trav16d-dv11A0A075B617 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav16d-dv11A0A075B617 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Trav16d-dv11A0A075B617 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Trav16d-dv11A0A075B617 Kansl2-202ENSMUST00000116400 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav16d-dv11A0A075B617 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
Trav16d-dv11A0A075B617 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
Trav16d-dv11A0A075B617 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav16d-dv11A0A075B617 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav16d-dv11A0A075B617 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav16d-dv11A0A075B617 AC166822.3-201ENSMUST00000227394 661 ntBASIC17.56■□□□□ 0.4
Trav16d-dv11A0A075B617 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Trav16d-dv11A0A075B617 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Trav16d-dv11A0A075B617 Odc1-201ENSMUST00000171737 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav16d-dv11A0A075B617 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav16d-dv11A0A075B617 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav16d-dv11A0A075B617 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Trav16d-dv11A0A075B617 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav16d-dv11A0A075B617 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav16d-dv11A0A075B617 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC17.54■□□□□ 0.4
Trav16d-dv11A0A075B617 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav16d-dv11A0A075B617 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Trav16d-dv11A0A075B617 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav16d-dv11A0A075B617 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Trav16d-dv11A0A075B617 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Trav16d-dv11A0A075B617 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav16d-dv11A0A075B617 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav16d-dv11A0A075B617 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Trav16d-dv11A0A075B617 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trav16d-dv11A0A075B617 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Trav16d-dv11A0A075B617 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC17.51■□□□□ 0.39
Trav16d-dv11A0A075B617 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav16d-dv11A0A075B617 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav16d-dv11A0A075B617 Gm20634-201ENSMUST00000090779 2956 ntBASIC17.51■□□□□ 0.39
Trav16d-dv11A0A075B617 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Trav16d-dv11A0A075B617 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
Trav16d-dv11A0A075B617 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav16d-dv11A0A075B617 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trav16d-dv11A0A075B617 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav16d-dv11A0A075B617 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav16d-dv11A0A075B617 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav16d-dv11A0A075B617 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Trav16d-dv11A0A075B617 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
Trav16d-dv11A0A075B617 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav16d-dv11A0A075B617 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav16d-dv11A0A075B617 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav16d-dv11A0A075B617 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trav16d-dv11A0A075B617 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav16d-dv11A0A075B617 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav16d-dv11A0A075B617 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav16d-dv11A0A075B617 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
Trav16d-dv11A0A075B617 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav16d-dv11A0A075B617 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav16d-dv11A0A075B617 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav16d-dv11A0A075B617 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trav16d-dv11A0A075B617 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav16d-dv11A0A075B617 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav16d-dv11A0A075B617 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav16d-dv11A0A075B617 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trav16d-dv11A0A075B617 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Trav16d-dv11A0A075B617 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms