Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YPL276WYPL276W 438 nt2.54□□□□□ -2
UPF3P48412 YPL216WYPL216W 3309 nt2.54□□□□□ -2
UPF3P48412 MSL5YLR116W 1431 nt2.53□□□□□ -2
UPF3P48412 NCL1YBL024W 2055 nt2.53□□□□□ -2
UPF3P48412 KEL2YGR238C 2649 nt2.53□□□□□ -2
UPF3P48412 AHC2YCR082W 387 nt2.53□□□□□ -2
UPF3P48412 RPL16AYIL133C 600 nt2.53□□□□□ -2
UPF3P48412 PRE8YML092C 753 nt2.53□□□□□ -2
UPF3P48412 YOR105WYOR105W 327 nt2.53□□□□□ -2
UPF3P48412 SRO77YBL106C 3033 nt2.53□□□□□ -2
UPF3P48412 DBP10YDL031W 2988 nt2.53□□□□□ -2
UPF3P48412 SEC26YDR238C 2922 nt2.53□□□□□ -2
UPF3P48412 PHR1YOR386W 1698 nt2.53□□□□□ -2
UPF3P48412 CBF2YGR140W 2871 nt2.52□□□□□ -2.01
UPF3P48412 PHO91YNR013C 2685 nt2.52□□□□□ -2.01
UPF3P48412 RTT10YPL183C 3042 nt2.52□□□□□ -2.01
UPF3P48412 SMB1YER029C 591 nt2.52□□□□□ -2.01
UPF3P48412 MXR1YER042W 555 nt2.52□□□□□ -2.01
UPF3P48412 YGR290WYGR290W 444 nt2.52□□□□□ -2.01
UPF3P48412 tW(CCA)G1tW(CCA)G1 72 nt2.52□□□□□ -2.01
UPF3P48412 tW(CCA)G2tW(CCA)G2 72 nt2.52□□□□□ -2.01
UPF3P48412 tW(CCA)JtW(CCA)J 72 nt2.52□□□□□ -2.01
UPF3P48412 tW(CCA)KtW(CCA)K 72 nt2.52□□□□□ -2.01
UPF3P48412 tW(CCA)MtW(CCA)M 72 nt2.52□□□□□ -2.01
UPF3P48412 tW(CCA)PtW(CCA)P 72 nt2.52□□□□□ -2.01
UPF3P48412 YNL010WYNL010W 726 nt2.52□□□□□ -2.01
UPF3P48412 TOR1YJR066W 7413 nt2.52□□□□□ -2.01
UPF3P48412 REV1YOR346W 2958 nt2.51□□□□□ -2.01
UPF3P48412 SYS1YJL004C 612 nt2.51□□□□□ -2.01
UPF3P48412 YJR140W-AYJR140W-A 150 nt2.51□□□□□ -2.01
UPF3P48412 YKL066WYKL066W 444 nt2.51□□□□□ -2.01
UPF3P48412 AIM32YML050W 936 nt2.51□□□□□ -2.01
UPF3P48412 NOP15YNL110C 663 nt2.51□□□□□ -2.01
UPF3P48412 TAE2YPL009C 3117 nt2.51□□□□□ -2.01
UPF3P48412 NFT1YKR103W 3657 nt2.5□□□□□ -2.01
UPF3P48412 PHO2YDL106C 1680 nt2.5□□□□□ -2.01
UPF3P48412 YKL111CYKL111C 336 nt2.5□□□□□ -2.01
UPF3P48412 YNL122CYNL122C 348 nt2.5□□□□□ -2.01
UPF3P48412 DGK1YOR311C 873 nt2.5□□□□□ -2.01
UPF3P48412 YIL080WYIL080W 4722 nt2.5□□□□□ -2.01
UPF3P48412 KAP123YER110C 3342 nt2.49□□□□□ -2.01
UPF3P48412 TCB2YNL087W 3537 nt2.49□□□□□ -2.01
UPF3P48412 SOK2YMR016C 2358 nt2.49□□□□□ -2.01
UPF3P48412 SAK1YER129W 3429 nt2.49□□□□□ -2.01
UPF3P48412 YDL025W-AYDL025W-A 105 nt2.49□□□□□ -2.01
UPF3P48412 MZM1YDR493W 372 nt2.49□□□□□ -2.01
UPF3P48412 YAP3YHL009C 993 nt2.49□□□□□ -2.01
UPF3P48412 SHE2YKL130C 741 nt2.49□□□□□ -2.01
UPF3P48412 RMP1YLR145W 606 nt2.49□□□□□ -2.01
UPF3P48412 VPS64YDR200C 1815 nt2.49□□□□□ -2.01
UPF3P48412 YPK1YKL126W 2043 nt2.49□□□□□ -2.01
UPF3P48412 GIN4YDR507C 3429 nt2.49□□□□□ -2.01
UPF3P48412 SKP2YNL311C 2292 nt2.48□□□□□ -2.01
UPF3P48412 YDL032WYDL032W 312 nt2.48□□□□□ -2.01
UPF3P48412 BNA7YDR428C 786 nt2.48□□□□□ -2.01
UPF3P48412 YHR130CYHR130C 336 nt2.48□□□□□ -2.01
UPF3P48412 CCW14YLR390W-A 717 nt2.48□□□□□ -2.01
UPF3P48412 PBI2YNL015W 228 nt2.48□□□□□ -2.01
UPF3P48412 GPI15YNL038W 690 nt2.48□□□□□ -2.01
UPF3P48412 HAA1YPR008W 2085 nt2.48□□□□□ -2.01
UPF3P48412 IRA2YOL081W 9240 nt2.47□□□□□ -2.01
UPF3P48412 ESL2YKR096W 3588 nt2.47□□□□□ -2.01
UPF3P48412 PRK1YIL095W 2433 nt2.47□□□□□ -2.01
UPF3P48412 CDC50YCR094W 1176 nt2.47□□□□□ -2.01
UPF3P48412 YDL068WYDL068W 330 nt2.47□□□□□ -2.01
UPF3P48412 RPL40AYIL148W 387 nt2.47□□□□□ -2.01
UPF3P48412 YJL127C-BYJL127C-B 159 nt2.47□□□□□ -2.01
UPF3P48412 YLR202CYLR202C 327 nt2.47□□□□□ -2.01
UPF3P48412 ICY1YMR195W 384 nt2.47□□□□□ -2.01
UPF3P48412 RPS7BYNL096C 573 nt2.47□□□□□ -2.01
UPF3P48412 OSW7YFR039C 1533 nt2.47□□□□□ -2.01
UPF3P48412 SPE1YKL184W 1401 nt2.46□□□□□ -2.02
UPF3P48412 YRB1YDR002W 606 nt2.46□□□□□ -2.02
UPF3P48412 YDR194W-AYDR194W-A 153 nt2.46□□□□□ -2.02
UPF3P48412 TIM9YEL020W-A 264 nt2.46□□□□□ -2.02
UPF3P48412 YPS5YGL259W 498 nt2.46□□□□□ -2.02
UPF3P48412 BIG1YHR101C 1008 nt2.46□□□□□ -2.02
UPF3P48412 TIM8YJR135W-A 264 nt2.46□□□□□ -2.02
UPF3P48412 KTI11YBL071W-A 249 nt2.46□□□□□ -2.02
UPF3P48412 ARP8YOR141C 2646 nt2.46□□□□□ -2.02
UPF3P48412 FKS3YMR306W 5358 nt2.46□□□□□ -2.02
UPF3P48412 YEF3YLR249W 3135 nt2.45□□□□□ -2.02
UPF3P48412 PET191YJR034W 327 nt2.45□□□□□ -2.02
UPF3P48412 YKL068W-AYKL068W-A 237 nt2.45□□□□□ -2.02
UPF3P48412 PAU8YAL068C 363 nt2.45□□□□□ -2.02
UPF3P48412 YLR456WYLR456W 615 nt2.45□□□□□ -2.02
UPF3P48412 PKR1YMR123W 369 nt2.45□□□□□ -2.02
UPF3P48412 YMR194C-AYMR194C-A 225 nt2.45□□□□□ -2.02
UPF3P48412 PAU20YOL161C 363 nt2.45□□□□□ -2.02
UPF3P48412 YJL016WYJL016W 1686 nt2.44□□□□□ -2.02
UPF3P48412 YHR214C-CYHR214C-C 1437 nt2.44□□□□□ -2.02
UPF3P48412 MRP10YDL045W-A 288 nt2.44□□□□□ -2.02
UPF3P48412 CTK3YML112W 891 nt2.44□□□□□ -2.02
UPF3P48412 JID1YPR061C 906 nt2.44□□□□□ -2.02
UPF3P48412 YBR012W-AYBR012W-A 1323 nt2.43□□□□□ -2.02
UPF3P48412 YOR142W-AYOR142W-A 1323 nt2.43□□□□□ -2.02
UPF3P48412 YPR158W-AYPR158W-A 1323 nt2.43□□□□□ -2.02
UPF3P48412 AFI1YOR129C 2682 nt2.43□□□□□ -2.02
UPF3P48412 YFH1YDL120W 525 nt2.43□□□□□ -2.02
UPF3P48412 AYR1YIL124W 894 nt2.43□□□□□ -2.02
Retrieved 100 of 7,029 protein–RNA pairs in 19.7 ms