Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC25.86■■□□□ 1.73
NPHP1O15259 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC25.86■■□□□ 1.73
NPHP1O15259 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC25.86■■□□□ 1.73
NPHP1O15259 AC211429.1-201ENST00000415277 523 ntBASIC25.86■■□□□ 1.73
NPHP1O15259 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.86■■□□□ 1.73
NPHP1O15259 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
NPHP1O15259 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC25.86■■□□□ 1.73
NPHP1O15259 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC25.86■■□□□ 1.73
NPHP1O15259 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC25.86■■□□□ 1.73
NPHP1O15259 AIRN-201ENST00000601203 4374 ntBASIC25.86■■□□□ 1.73
NPHP1O15259 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
NPHP1O15259 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP1O15259 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP1O15259 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
NPHP1O15259 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP1O15259 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC25.85■■□□□ 1.73
NPHP1O15259 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP1O15259 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP1O15259 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC25.85■■□□□ 1.73
NPHP1O15259 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP1O15259 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
NPHP1O15259 C2orf69P4-201ENST00000565394 541 ntBASIC25.85■■□□□ 1.73
NPHP1O15259 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
NPHP1O15259 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC25.85■■□□□ 1.73
NPHP1O15259 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP1O15259 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP1O15259 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP1O15259 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
NPHP1O15259 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP1O15259 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
NPHP1O15259 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP1O15259 THEM4-205ENST00000489410 643 ntTSL 2 BASIC25.84■■□□□ 1.73
NPHP1O15259 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC25.84■■□□□ 1.73
NPHP1O15259 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC25.84■■□□□ 1.73
NPHP1O15259 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC25.84■■□□□ 1.73
NPHP1O15259 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP1O15259 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP1O15259 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP1O15259 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
NPHP1O15259 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC25.84■■□□□ 1.73
NPHP1O15259 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC25.83■■□□□ 1.73
NPHP1O15259 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC25.83■■□□□ 1.73
NPHP1O15259 AC127496.7-201ENST00000625110 1798 ntBASIC25.83■■□□□ 1.73
NPHP1O15259 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
NPHP1O15259 MIR1224-201ENST00000408193 85 ntBASIC25.83■■□□□ 1.73
NPHP1O15259 AC239809.2-201ENST00000415381 517 ntBASIC25.83■■□□□ 1.73
NPHP1O15259 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC25.83■■□□□ 1.73
NPHP1O15259 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC25.83■■□□□ 1.73
NPHP1O15259 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC25.83■■□□□ 1.73
NPHP1O15259 LINC01023-201ENST00000606054 436 ntBASIC25.83■■□□□ 1.73
NPHP1O15259 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC25.83■■□□□ 1.73
NPHP1O15259 AL023875.1-201ENST00000640777 796 ntBASIC25.83■■□□□ 1.73
NPHP1O15259 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
NPHP1O15259 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC25.83■■□□□ 1.73
NPHP1O15259 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
NPHP1O15259 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC25.83■■□□□ 1.72
NPHP1O15259 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
NPHP1O15259 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC25.83■■□□□ 1.72
NPHP1O15259 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC25.82■■□□□ 1.72
NPHP1O15259 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 GGT1-206ENST00000404223 952 ntTSL 2 BASIC25.82■■□□□ 1.72
NPHP1O15259 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC25.82■■□□□ 1.72
NPHP1O15259 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC25.82■■□□□ 1.72
NPHP1O15259 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
NPHP1O15259 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
NPHP1O15259 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
NPHP1O15259 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
NPHP1O15259 AC012676.1-201ENST00000574705 1949 ntBASIC25.82■■□□□ 1.72
NPHP1O15259 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC25.82■■□□□ 1.72
NPHP1O15259 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
NPHP1O15259 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC25.81■■□□□ 1.72
NPHP1O15259 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms