Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 RPS2P55-201ENST00000397318 883 ntBASIC18.68■□□□□ 0.58
SHANK1Q9Y566 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 AC107956.1-201ENST00000494359 873 ntBASIC18.68■□□□□ 0.58
SHANK1Q9Y566 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 MTDHP1-201ENST00000605323 784 ntBASIC18.68■□□□□ 0.58
SHANK1Q9Y566 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
SHANK1Q9Y566 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 AC133681.1-201ENST00000465482 601 ntBASIC18.67■□□□□ 0.58
SHANK1Q9Y566 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 AC233702.5-201ENST00000584107 538 ntBASIC18.67■□□□□ 0.58
SHANK1Q9Y566 AL445228.2-201ENST00000605589 952 ntBASIC18.67■□□□□ 0.58
SHANK1Q9Y566 AC012306.2-201ENST00000609350 630 ntBASIC18.67■□□□□ 0.58
SHANK1Q9Y566 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SHANK1Q9Y566 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 RCN1P1-201ENST00000400413 996 ntBASIC18.66■□□□□ 0.58
SHANK1Q9Y566 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 C11orf96-202ENST00000528572 1834 ntBASIC18.66■□□□□ 0.58
SHANK1Q9Y566 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 AC124016.1-201ENST00000609552 612 ntBASIC18.66■□□□□ 0.58
SHANK1Q9Y566 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.66■□□□□ 0.58
SHANK1Q9Y566 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 RN7SL850P-201ENST00000579959 291 ntBASIC18.65■□□□□ 0.58
SHANK1Q9Y566 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SHANK1Q9Y566 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
SHANK1Q9Y566 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 AC087499.1-201ENST00000418141 1075 ntBASIC18.64■□□□□ 0.57
SHANK1Q9Y566 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.64■□□□□ 0.57
SHANK1Q9Y566 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 KRT18P68-201ENST00000392293 1000 ntBASIC18.64■□□□□ 0.57
SHANK1Q9Y566 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.64■□□□□ 0.57
SHANK1Q9Y566 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SHANK1Q9Y566 AC105020.6-201ENST00000621523 1217 ntBASIC18.64■□□□□ 0.57
SHANK1Q9Y566 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms